INFO 2025-06-26 05:41:21,992 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:41:21,992 process.py process_mission():434 [1] dorado_info[mission]["comment"] = OCCO2003245: missions {02,03,04}: Re-portaled 7/11/05 - ctdToUse = ctd1 INFO 2025-06-26 05:41:21,992 process.py process_mission():449 [1] Processing OCCO mission 2003.245.04 by user docker_user on host 671049448ece INFO 2025-06-26 05:41:21,992 process.py download_process():165 [1] Download and processing steps for 2003.245.04 INFO 2025-06-26 05:41:21,992 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003245/2003.245.04 INFO 2025-06-26 05:41:21,992 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003245/2003.245.04 to /data/auv_data/dorado/missionlogs/2003.245.04 INFO 2025-06-26 05:41:22,937 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.245.04 INFO 2025-06-26 05:41:22,937 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.245.04/ctdDriver.log (1464539 bytes) INFO 2025-06-26 05:41:23,048 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.245.04/ctdDriver2.log (1464533 bytes) INFO 2025-06-26 05:41:23,159 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.245.04/gps.log (16586 bytes) INFO 2025-06-26 05:41:23,167 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.245.04/hydroscatlog.log (1000334 bytes) INFO 2025-06-26 05:41:23,295 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.245.04/navigation.log (4066770 bytes) INFO 2025-06-26 05:41:23,599 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.245.04/isuslog.log (79253 bytes) INFO 2025-06-26 05:41:23,612 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.245.04/parosci.log (1000934 bytes) INFO 2025-06-26 05:41:23,700 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.245.04/tailCone.log (1000411 bytes) WARNING 2025-06-26 05:41:23,700 logs2netcdfs.py download_process_logs():795 [1] Failed to parse long_name & units from header in file /data/auv_data/dorado/missionlogs/2003.245.04/tailCone.log INFO 2025-06-26 05:41:23,700 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.76 seconds WARNING 2025-06-26 05:41:23,700 process.py download_process():196 [1] No lopc.bin file for 2003.245.04 INFO 2025-06-26 05:41:23,700 process.py calibrate():227 [1] Calibration steps for 2003.245.04 INFO 2025-06-26 05:41:23,834 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.245.04 INFO 2025-06-26 05:41:23,842 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:41:23,844 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:41:25,289 calibrate.py _nudge_pos():1806 [1] 172: 0.140 0.0002988 0.0002067 9725 32.41 1.367 1.181 2003-09-02T22:15:07.253031552 INFO 2025-06-26 05:41:25,300 calibrate.py _nudge_pos():1806 [1] 173: 0.140 0.0002530 0.0002465 45 0.15 255.817 311.459 2003-09-02T22:15:16.252415104 INFO 2025-06-26 05:41:25,745 calibrate.py _nudge_pos():1806 [1] 221: 0.150 0.0000059 -0.0000123 45 0.15 5.946 -15.589 2003-09-02T22:16:12.248579200 INFO 2025-06-26 05:41:25,848 calibrate.py _nudge_pos():1806 [1] 232: 0.070 0.0002838 0.0001716 9736 32.45 1.297 0.980 2003-09-02T22:48:49.454501248 INFO 2025-06-26 05:41:26,148 calibrate.py _nudge_pos():1862 [1] 243: - - - 4 0.01 - - INFO 2025-06-26 05:41:26,148 calibrate.py _nudge_pos():1868 [1] Points in final series = 20743 WARNING 2025-06-26 05:41:26,168 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:41:26,335 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:41:26,509 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 10 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:41:26,637 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 10 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:41:26,638 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.245.04/ctd1.nc INFO 2025-06-26 05:41:26,640 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:41:26,640 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:41:26,640 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:41:26,798 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 10 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:41:26,921 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 10 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:41:26,923 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.245.04/ctd2.nc INFO 2025-06-26 05:41:26,924 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:41:26,924 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:41:26,925 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 05:41:26,932 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.245.04 ERROR 2025-06-26 05:41:26,933 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.245.04 ERROR 2025-06-26 05:41:26,933 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.245.04 ERROR 2025-06-26 05:41:26,933 calibrate.py process_logs():3542 [1] Error processing tailcone: tailcone has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.245.04 INFO 2025-06-26 05:41:26,933 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.245.04/dorado_2003.245.04_cal.nc INFO 2025-06-26 05:41:26,979 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, time INFO 2025-06-26 05:41:26,982 process.py align():251 [1] Alignment steps for 2003.245.04 INFO 2025-06-26 05:41:27,003 align.py process_cal():139 [1] Processing dorado_2003.245.04_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.245.04 INFO 2025-06-26 05:41:27,012 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:41:27,014 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:41:27,036 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:41:27,039 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:41:27,059 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:41:27,061 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:41:27,073 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:41:27,074 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:41:27,082 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:41:27,084 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:41:27,104 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.245.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:41:27,106 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:27,126 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.245.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:41:27,128 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:27,148 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.245.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:41:27,150 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:27,170 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.245.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:27,172 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:27,191 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.245.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:27,194 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:27,213 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.245.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:27,215 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:27,235 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.245.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:27,237 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:27,256 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.245.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:27,259 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:27,279 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.245.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:27,281 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:27,302 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.245.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:27,304 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:27,324 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.245.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:27,326 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:27,346 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.245.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:27,348 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:27,368 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.245.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:27,370 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:27,390 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.245.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:27,392 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:27,412 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.245.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:27,415 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:27,435 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.245.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:27,437 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:27,457 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.245.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:27,460 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:27,479 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.245.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:27,482 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:27,502 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.245.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:27,504 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:27,524 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.245.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:27,526 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:27,549 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:41:27,567 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:41:27,585 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:41:27,595 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.245.04/dorado_2003.245.04_align.nc INFO 2025-06-26 05:41:27,634 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw INFO 2025-06-26 05:41:27,636 process.py resample():273 [1] Resampling steps for 2003.245.04 INFO 2025-06-26 05:41:27,636 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:41:27,654 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.245.04/dorado_2003.245.04_align.nc mission netCDF file INFO 2025-06-26 05:41:27,658 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.245.04/dorado_2003.245.04_align.nc mission netCDF file INFO 2025-06-26 05:41:27,659 resample.py get_mission_start_end():1145 [1] navigation: 2003-09-02T21:40:12.856507520 to 2003-09-02T22:49:21.252323072 (0 days 00:00:00.069995136 before mission_end) INFO 2025-06-26 05:41:27,660 resample.py get_mission_start_end():1145 [1] hs2 : 2003-09-02T21:39:55.237714560 to 2003-09-02T22:49:21.312318976 (0 days 00:00:00.009999232 before mission_end) INFO 2025-06-26 05:41:27,661 resample.py get_mission_start_end():1145 [1] ctd1 : 2003-09-02T21:40:02.637207680 to 2003-09-02T22:49:21.302319616 (0 days 00:00:00.019998592 before mission_end) INFO 2025-06-26 05:41:27,663 resample.py get_mission_start_end():1145 [1] ctd2 : 2003-09-02T21:40:02.667205632 to 2003-09-02T22:49:21.322318208 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:41:27,664 resample.py get_mission_start_end():1145 [1] isus : 2003-09-02T21:41:07.892737408 to 2003-09-02T22:49:20.762356608 (0 days 00:00:00.559961600 before mission_end) INFO 2025-06-26 05:41:27,664 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.245.04/dorado_2003.245.04_align.nc mission netCDF file INFO 2025-06-26 05:41:27,665 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:27,733 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:27,747 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:27,760 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:27,774 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:27,788 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:27,801 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:27,814 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:27,827 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:27,839 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:27,851 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:27,863 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:27,875 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:27,886 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:27,898 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:27,910 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:27,921 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:27,934 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:27,946 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:27,958 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:27,970 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:27,982 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:27,995 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:28,004 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:28,014 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:28,023 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:28,133 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.245.04/dorado_2003.245.04_1S.nc INFO 2025-06-26 05:41:28,804 create_products.py gulper_odv():401 [1] No gulper times found for 2003.245.04 INFO 2025-06-26 05:41:28,804 process.py archive():337 [1] Archiving steps for 2003.245.04 INFO 2025-06-26 05:41:28,804 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.245.04/dorado_2003.245.04, BASE_PATH = /data/auv_data INFO 2025-06-26 05:41:28,804 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.245.04/dorado_2003.245.04 files to /Volumes/AUVCTD/surveys/2003/netcdf INFO 2025-06-26 05:41:28,805 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.245.04_1S.nc INFO 2025-06-26 05:41:28,814 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.245.04/dorado_2003.245.04_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:41:28,815 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.245.04_cal.nc INFO 2025-06-26 05:41:28,836 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.245.04/dorado_2003.245.04_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:41:28,837 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.245.04_align.nc INFO 2025-06-26 05:41:28,858 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.245.04/dorado_2003.245.04_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:41:28,868 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.245.04/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003245/2003.245.04 done. INFO 2025-06-26 05:41:28,878 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.245.04/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003245/2003.245.04 done. INFO 2025-06-26 05:41:28,882 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.245.04/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003245/2003.245.04 done. INFO 2025-06-26 05:41:28,890 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.245.04/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003245/2003.245.04 done. INFO 2025-06-26 05:41:28,907 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.245.04/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003245/2003.245.04 done. INFO 2025-06-26 05:41:28,911 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.245.04/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003245/2003.245.04 done. INFO 2025-06-26 05:41:28,920 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.245.04/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003245/2003.245.04 done. INFO 2025-06-26 05:41:28,920 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:41:28,920 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.245.04/dorado_2003.245.04_processing.log /Volumes/AUVCTD/surveys/2003/netcdf