INFO 2025-06-26 05:41:14,536 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:41:14,536 process.py process_mission():434 [1] dorado_info[mission]["comment"] = OCCO2003245: missions {02,03,04}: Re-portaled 7/11/05 - ctdToUse = ctd1 INFO 2025-06-26 05:41:14,536 process.py process_mission():449 [1] Processing OCCO mission 2003.245.03 by user docker_user on host 671049448ece INFO 2025-06-26 05:41:14,536 process.py download_process():165 [1] Download and processing steps for 2003.245.03 INFO 2025-06-26 05:41:14,536 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003245/2003.245.03 INFO 2025-06-26 05:41:14,536 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003245/2003.245.03 to /data/auv_data/dorado/missionlogs/2003.245.03 INFO 2025-06-26 05:41:15,696 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.245.03 INFO 2025-06-26 05:41:15,697 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.245.03/ctdDriver.log (1462867 bytes) INFO 2025-06-26 05:41:15,807 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.245.03/ctdDriver2.log (1462861 bytes) INFO 2025-06-26 05:41:15,921 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.245.03/gps.log (18626 bytes) INFO 2025-06-26 05:41:15,930 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.245.03/hydroscatlog.log (999254 bytes) INFO 2025-06-26 05:41:16,054 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.245.03/navigation.log (4062262 bytes) INFO 2025-06-26 05:41:16,355 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.245.03/isuslog.log (79253 bytes) INFO 2025-06-26 05:41:16,367 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.245.03/parosci.log (999878 bytes) INFO 2025-06-26 05:41:16,455 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.245.03/tailCone.log (999595 bytes) WARNING 2025-06-26 05:41:16,455 logs2netcdfs.py download_process_logs():795 [1] Failed to parse long_name & units from header in file /data/auv_data/dorado/missionlogs/2003.245.03/tailCone.log INFO 2025-06-26 05:41:16,455 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.76 seconds WARNING 2025-06-26 05:41:16,455 process.py download_process():196 [1] No lopc.bin file for 2003.245.03 INFO 2025-06-26 05:41:16,455 process.py calibrate():227 [1] Calibration steps for 2003.245.03 INFO 2025-06-26 05:41:16,517 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.245.03 INFO 2025-06-26 05:41:16,526 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:41:16,528 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:41:18,184 calibrate.py _nudge_pos():1806 [1] 193: 0.050 -0.0035681 -0.0022139 12326 41.08 -12.876 -9.985 2003-09-02T21:13:07.107879040 INFO 2025-06-26 05:41:18,855 calibrate.py _nudge_pos():1806 [1] 265: 0.140 -0.0022802 -0.0009870 7025 23.41 -14.435 -7.811 2003-09-02T21:37:43.106766080 INFO 2025-06-26 05:41:19,155 calibrate.py _nudge_pos():1862 [1] 276: - - - 4 0.01 - - INFO 2025-06-26 05:41:19,156 calibrate.py _nudge_pos():1868 [1] Points in final series = 20720 WARNING 2025-06-26 05:41:19,176 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:41:19,337 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:41:19,505 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 10 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:41:19,629 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 10 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:41:19,631 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.245.03/ctd1.nc INFO 2025-06-26 05:41:19,632 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:41:19,632 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:41:19,632 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:41:19,788 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 10 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:41:19,912 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 10 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:41:19,914 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.245.03/ctd2.nc INFO 2025-06-26 05:41:19,915 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:41:19,915 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:41:19,915 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 05:41:19,923 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.245.03 ERROR 2025-06-26 05:41:19,924 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.245.03 ERROR 2025-06-26 05:41:19,924 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.245.03 ERROR 2025-06-26 05:41:19,924 calibrate.py process_logs():3542 [1] Error processing tailcone: tailcone has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.245.03 INFO 2025-06-26 05:41:19,925 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.245.03/dorado_2003.245.03_cal.nc INFO 2025-06-26 05:41:19,970 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, time INFO 2025-06-26 05:41:19,973 process.py align():251 [1] Alignment steps for 2003.245.03 INFO 2025-06-26 05:41:19,994 align.py process_cal():139 [1] Processing dorado_2003.245.03_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.245.03 INFO 2025-06-26 05:41:20,004 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:41:20,007 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:41:20,033 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:41:20,035 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:41:20,056 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:41:20,058 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:41:20,070 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:41:20,070 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:41:20,079 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:41:20,081 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:41:20,103 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.245.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:41:20,105 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:20,124 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.245.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:41:20,126 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:20,147 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.245.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:41:20,150 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:20,171 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.245.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:20,173 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:20,193 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.245.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:20,195 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:20,216 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.245.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:20,219 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:20,239 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.245.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:20,242 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:20,261 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.245.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:20,264 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:20,283 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.245.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:20,286 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:20,306 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.245.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:20,308 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:20,327 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.245.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:20,330 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:20,349 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.245.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:20,351 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:20,371 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.245.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:20,373 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:20,392 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.245.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:20,395 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:20,415 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.245.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:20,418 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:20,438 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.245.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:20,440 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:20,462 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.245.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:20,465 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:20,486 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.245.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:20,488 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:20,509 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.245.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:20,512 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:20,532 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.245.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:20,534 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:20,559 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:41:20,577 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:41:20,596 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:41:20,605 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.245.03/dorado_2003.245.03_align.nc INFO 2025-06-26 05:41:20,644 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw INFO 2025-06-26 05:41:20,646 process.py resample():273 [1] Resampling steps for 2003.245.03 INFO 2025-06-26 05:41:20,647 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:41:20,665 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.245.03/dorado_2003.245.03_align.nc mission netCDF file INFO 2025-06-26 05:41:20,669 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.245.03/dorado_2003.245.03_align.nc mission netCDF file INFO 2025-06-26 05:41:20,670 resample.py get_mission_start_end():1145 [1] navigation: 2003-09-02T20:29:12.108388736 to 2003-09-02T21:38:15.904519296 (0 days 00:00:00.069995264 before mission_end) INFO 2025-06-26 05:41:20,671 resample.py get_mission_start_end():1145 [1] hs2 : 2003-09-02T20:28:54.349605504 to 2003-09-02T21:38:15.974514560 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:41:20,673 resample.py get_mission_start_end():1145 [1] ctd1 : 2003-09-02T20:29:01.959084160 to 2003-09-02T21:38:15.884520832 (0 days 00:00:00.089993728 before mission_end) INFO 2025-06-26 05:41:20,674 resample.py get_mission_start_end():1145 [1] ctd2 : 2003-09-02T20:29:01.889088896 to 2003-09-02T21:38:15.794526976 (0 days 00:00:00.179987584 before mission_end) INFO 2025-06-26 05:41:20,675 resample.py get_mission_start_end():1145 [1] isus : 2003-09-02T20:30:06.864637696 to 2003-09-02T21:38:15.534544768 (0 days 00:00:00.439969792 before mission_end) INFO 2025-06-26 05:41:20,676 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.245.03/dorado_2003.245.03_align.nc mission netCDF file INFO 2025-06-26 05:41:20,676 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:20,744 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:20,759 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:20,772 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:20,786 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:20,799 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:20,812 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:20,825 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:20,837 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:20,848 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:20,859 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:20,871 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:20,882 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:20,893 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:20,904 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:20,916 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:20,927 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:20,941 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:20,953 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:20,966 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:20,978 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:20,991 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:21,004 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:21,014 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:21,023 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:21,032 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:21,140 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.245.03/dorado_2003.245.03_1S.nc INFO 2025-06-26 05:41:21,850 create_products.py gulper_odv():401 [1] No gulper times found for 2003.245.03 INFO 2025-06-26 05:41:21,850 process.py archive():337 [1] Archiving steps for 2003.245.03 INFO 2025-06-26 05:41:21,850 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.245.03/dorado_2003.245.03, BASE_PATH = /data/auv_data INFO 2025-06-26 05:41:21,851 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.245.03/dorado_2003.245.03 files to /Volumes/AUVCTD/surveys/2003/netcdf INFO 2025-06-26 05:41:21,852 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.245.03_1S.nc INFO 2025-06-26 05:41:21,862 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.245.03/dorado_2003.245.03_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:41:21,863 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.245.03_cal.nc INFO 2025-06-26 05:41:21,885 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.245.03/dorado_2003.245.03_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:41:21,886 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.245.03_align.nc INFO 2025-06-26 05:41:21,908 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.245.03/dorado_2003.245.03_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:41:21,920 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.245.03/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003245/2003.245.03 done. INFO 2025-06-26 05:41:21,931 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.245.03/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003245/2003.245.03 done. INFO 2025-06-26 05:41:21,935 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.245.03/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003245/2003.245.03 done. INFO 2025-06-26 05:41:21,946 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.245.03/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003245/2003.245.03 done. INFO 2025-06-26 05:41:21,964 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.245.03/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003245/2003.245.03 done. INFO 2025-06-26 05:41:21,970 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.245.03/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003245/2003.245.03 done. INFO 2025-06-26 05:41:21,978 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.245.03/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003245/2003.245.03 done. INFO 2025-06-26 05:41:21,978 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:41:21,979 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.245.03/dorado_2003.245.03_processing.log /Volumes/AUVCTD/surveys/2003/netcdf