INFO 2025-06-26 05:40:36,210 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:40:36,210 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Re-portaled 7/11/05 - ctdToUse = ctd1 INFO 2025-06-26 05:40:36,210 process.py process_mission():449 [1] Processing AUVCTD mission 2003.238.02 by user docker_user on host 671049448ece INFO 2025-06-26 05:40:36,210 process.py download_process():165 [1] Download and processing steps for 2003.238.02 INFO 2025-06-26 05:40:36,210 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003238/2003.238.02 INFO 2025-06-26 05:40:36,210 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003238/2003.238.02 to /data/auv_data/dorado/missionlogs/2003.238.02 INFO 2025-06-26 05:40:38,319 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.238.02 INFO 2025-06-26 05:40:38,319 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.238.02/ctdDriver.log (2855819 bytes) INFO 2025-06-26 05:40:38,538 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.238.02/ctdDriver2.log (2855901 bytes) INFO 2025-06-26 05:40:38,764 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.238.02/gps.log (22226 bytes) INFO 2025-06-26 05:40:38,774 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.238.02/hydroscatlog.log (1950554 bytes) INFO 2025-06-26 05:40:39,001 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.238.02/navigation.log (7948746 bytes) INFO 2025-06-26 05:40:39,572 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.238.02/isuslog.log (156021 bytes) INFO 2025-06-26 05:40:39,592 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.238.02/parosci.log (1951574 bytes) INFO 2025-06-26 05:40:39,759 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.238.02/tailCone.log (1951147 bytes) WARNING 2025-06-26 05:40:39,759 logs2netcdfs.py download_process_logs():795 [1] Failed to parse long_name & units from header in file /data/auv_data/dorado/missionlogs/2003.238.02/tailCone.log INFO 2025-06-26 05:40:39,760 logs2netcdfs.py download_process_logs():807 [1] Time to process: 1.44 seconds WARNING 2025-06-26 05:40:39,760 process.py download_process():196 [1] No lopc.bin file for 2003.238.02 INFO 2025-06-26 05:40:39,760 process.py calibrate():227 [1] Calibration steps for 2003.238.02 INFO 2025-06-26 05:40:39,843 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.238.02 INFO 2025-06-26 05:40:39,855 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:40:39,857 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:40:41,138 calibrate.py _nudge_pos():1806 [1] 151: 0.050 0.0000577 -0.0000527 65 0.21 40.171 -45.796 2003-08-26T16:21:59.756204544 INFO 2025-06-26 05:40:41,248 calibrate.py _nudge_pos():1806 [1] 163: 0.200 0.0052163 -0.0069119 11530 38.43 20.154 -33.328 2003-08-26T17:00:36.757479040 INFO 2025-06-26 05:40:41,748 calibrate.py _nudge_pos():1806 [1] 216: 0.200 0.0000190 -0.0000248 19 0.06 46.945 -76.523 2003-08-26T17:01:32.763642368 INFO 2025-06-26 05:40:41,796 calibrate.py _nudge_pos():1806 [1] 221: 0.150 0.0041170 -0.0045973 11370 37.90 16.129 -22.479 2003-08-26T17:39:30.957575424 INFO 2025-06-26 05:40:42,300 calibrate.py _nudge_pos():1806 [1] 274: 0.090 0.0023214 -0.0031753 10961 36.53 9.433 -16.105 2003-08-26T18:16:55.163836672 INFO 2025-06-26 05:40:42,767 calibrate.py _nudge_pos():1806 [1] 324: 0.100 0.0000318 -0.0001143 35 0.11 41.634 -186.910 2003-08-26T18:17:51.160000768 INFO 2025-06-26 05:40:42,805 calibrate.py _nudge_pos():1806 [1] 328: 0.150 0.0008858 -0.0003673 4805 16.01 8.211 -4.250 2003-08-26T18:33:55.163961984 INFO 2025-06-26 05:40:42,815 calibrate.py _nudge_pos():1806 [1] 329: 0.160 0.0008882 -0.0003847 90 0.30 444.409 -240.288 2003-08-26T18:34:13.162729088 INFO 2025-06-26 05:40:43,001 calibrate.py _nudge_pos():1806 [1] 349: 0.160 0.0000065 -0.0000454 35 0.11 8.526 -74.313 2003-08-26T18:34:39.160947968 INFO 2025-06-26 05:40:43,082 calibrate.py _nudge_pos():1862 [1] 337: - - - 5 0.01 - - INFO 2025-06-26 05:40:43,082 calibrate.py _nudge_pos():1868 [1] Points in final series = 40504 WARNING 2025-06-26 05:40:43,118 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:40:43,419 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:40:43,728 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:40:43,970 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:40:43,972 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.238.02/ctd1.nc INFO 2025-06-26 05:40:43,973 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd1_salinity values to NaN INFO 2025-06-26 05:40:43,974 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:40:43,974 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:40:44,270 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:40:44,511 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:40:44,513 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.238.02/ctd2.nc INFO 2025-06-26 05:40:44,514 calibrate.py _range_qc_combined_nc():898 [1] Setting 2 ctd2_salinity values to NaN INFO 2025-06-26 05:40:44,514 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:40:44,515 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 05:40:44,524 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.238.02 ERROR 2025-06-26 05:40:44,524 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.238.02 ERROR 2025-06-26 05:40:44,524 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.238.02 ERROR 2025-06-26 05:40:44,525 calibrate.py process_logs():3542 [1] Error processing tailcone: tailcone has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.238.02 INFO 2025-06-26 05:40:44,525 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.238.02/dorado_2003.238.02_cal.nc INFO 2025-06-26 05:40:44,577 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, time INFO 2025-06-26 05:40:44,580 process.py align():251 [1] Alignment steps for 2003.238.02 INFO 2025-06-26 05:40:44,601 align.py process_cal():139 [1] Processing dorado_2003.238.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.238.02 INFO 2025-06-26 05:40:44,616 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:40:44,619 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:40:44,654 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:40:44,656 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:40:44,690 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:40:44,693 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:40:44,715 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:40:44,715 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:40:44,729 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:40:44,732 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:40:44,764 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.238.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:40:44,767 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:44,797 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.238.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:40:44,799 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:44,830 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.238.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:40:44,832 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:44,862 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.238.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:44,864 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:44,895 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.238.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:44,898 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:44,928 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.238.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:44,931 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:44,963 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.238.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:44,965 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:44,996 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.238.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:44,999 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:45,029 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.238.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:45,032 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:45,062 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.238.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:45,065 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:45,096 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.238.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:45,098 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:45,129 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.238.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:45,132 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:45,162 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.238.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:45,165 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:45,196 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.238.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:45,200 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:45,232 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.238.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:45,235 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:45,267 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.238.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:45,270 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:45,301 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.238.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:45,304 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:45,336 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.238.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:45,339 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:45,371 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.238.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:45,374 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:45,406 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.238.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:45,408 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:45,443 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:40:45,468 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:40:45,493 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:40:45,505 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.238.02/dorado_2003.238.02_align.nc INFO 2025-06-26 05:40:45,554 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw INFO 2025-06-26 05:40:45,556 process.py resample():273 [1] Resampling steps for 2003.238.02 INFO 2025-06-26 05:40:45,557 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:40:45,577 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.238.02/dorado_2003.238.02_align.nc mission netCDF file INFO 2025-06-26 05:40:45,581 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.238.02/dorado_2003.238.02_align.nc mission netCDF file INFO 2025-06-26 05:40:45,582 resample.py get_mission_start_end():1145 [1] navigation: 2003-08-26T16:19:38.565876736 to 2003-08-26T18:34:48.160331520 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:40:45,583 resample.py get_mission_start_end():1145 [1] hs2 : 2003-08-26T16:19:20.497114496 to 2003-08-26T18:34:48.130333568 (0 days 00:00:00.029997952 before mission_end) INFO 2025-06-26 05:40:45,584 resample.py get_mission_start_end():1145 [1] ctd1 : 2003-08-26T16:19:36.676006144 to 2003-08-26T18:34:48.070337664 (0 days 00:00:00.089993856 before mission_end) INFO 2025-06-26 05:40:45,586 resample.py get_mission_start_end():1145 [1] ctd2 : 2003-08-26T16:19:36.466020608 to 2003-08-26T18:34:48.070337664 (0 days 00:00:00.089993856 before mission_end) INFO 2025-06-26 05:40:45,587 resample.py get_mission_start_end():1145 [1] isus : 2003-08-26T16:20:32.652171648 to 2003-08-26T18:34:46.830422528 (0 days 00:00:01.329908992 before mission_end) INFO 2025-06-26 05:40:45,587 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.238.02/dorado_2003.238.02_align.nc mission netCDF file INFO 2025-06-26 05:40:45,588 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:45,719 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:45,748 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:45,776 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:45,804 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:45,828 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:45,846 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:45,863 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:45,880 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:45,897 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:45,913 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:45,929 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:45,946 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:45,962 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:45,978 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:45,995 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:46,012 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:46,031 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:46,050 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:46,068 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:46,086 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:46,104 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:46,121 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:46,133 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:46,143 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:46,153 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:46,286 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.238.02/dorado_2003.238.02_1S.nc INFO 2025-06-26 05:40:47,091 create_products.py gulper_odv():401 [1] No gulper times found for 2003.238.02 INFO 2025-06-26 05:40:47,091 process.py archive():337 [1] Archiving steps for 2003.238.02 INFO 2025-06-26 05:40:47,091 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.238.02/dorado_2003.238.02, BASE_PATH = /data/auv_data INFO 2025-06-26 05:40:47,092 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.238.02/dorado_2003.238.02 files to /Volumes/AUVCTD/surveys/2003/netcdf INFO 2025-06-26 05:40:47,093 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.238.02_1S.nc INFO 2025-06-26 05:40:47,105 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.238.02/dorado_2003.238.02_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:40:47,106 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.238.02_cal.nc INFO 2025-06-26 05:40:47,142 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.238.02/dorado_2003.238.02_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:40:47,143 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.238.02_align.nc INFO 2025-06-26 05:40:47,179 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.238.02/dorado_2003.238.02_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:40:47,196 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.238.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003238/2003.238.02 done. INFO 2025-06-26 05:40:47,210 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.238.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003238/2003.238.02 done. INFO 2025-06-26 05:40:47,215 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.238.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003238/2003.238.02 done. INFO 2025-06-26 05:40:47,228 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.238.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003238/2003.238.02 done. INFO 2025-06-26 05:40:47,259 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.238.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003238/2003.238.02 done. INFO 2025-06-26 05:40:47,265 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.238.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003238/2003.238.02 done. INFO 2025-06-26 05:40:47,277 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.238.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003238/2003.238.02 done. INFO 2025-06-26 05:40:47,277 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:40:47,277 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.238.02/dorado_2003.238.02_processing.log /Volumes/AUVCTD/surveys/2003/netcdf