INFO 2025-06-26 05:39:47,384 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:39:47,384 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Re-portaled 7/8/05. Increased tDiffCrit to 800 on 8/3/06 - ctdToUse = ctd1 INFO 2025-06-26 05:39:47,384 process.py process_mission():449 [1] Processing OCCO mission 2003.233.06 by user docker_user on host 671049448ece INFO 2025-06-26 05:39:47,384 process.py download_process():165 [1] Download and processing steps for 2003.233.06 INFO 2025-06-26 05:39:47,384 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003233/2003.233.06 INFO 2025-06-26 05:39:47,384 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003233/2003.233.06 to /data/auv_data/dorado/missionlogs/2003.233.06 INFO 2025-06-26 05:39:48,444 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.233.06 INFO 2025-06-26 05:39:48,444 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.233.06/ctdDriver.log (1578851 bytes) INFO 2025-06-26 05:39:48,563 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.233.06/ctdDriver2.log (1578757 bytes) INFO 2025-06-26 05:39:48,680 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.233.06/gps.log (16886 bytes) INFO 2025-06-26 05:39:48,688 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.233.06/hydroscatlog.log (1080254 bytes) INFO 2025-06-26 05:39:48,819 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.233.06/navigation.log (4393502 bytes) INFO 2025-06-26 05:39:49,133 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.233.06/isuslog.log (85941 bytes) INFO 2025-06-26 05:39:49,145 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.233.06/parosci.log (1080998 bytes) INFO 2025-06-26 05:39:49,238 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.233.06/tailCone.log (1080715 bytes) WARNING 2025-06-26 05:39:49,239 logs2netcdfs.py download_process_logs():795 [1] Failed to parse long_name & units from header in file /data/auv_data/dorado/missionlogs/2003.233.06/tailCone.log INFO 2025-06-26 05:39:49,239 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.79 seconds WARNING 2025-06-26 05:39:49,239 process.py download_process():196 [1] No lopc.bin file for 2003.233.06 INFO 2025-06-26 05:39:49,239 process.py calibrate():227 [1] Calibration steps for 2003.233.06 INFO 2025-06-26 05:39:49,305 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.233.06 INFO 2025-06-26 05:39:49,315 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:39:49,316 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:39:50,845 calibrate.py _nudge_pos():1806 [1] 182: 0.200 -0.0000908 0.0001165 9710 32.36 -0.416 0.667 2003-08-21T21:46:07.026147200 INFO 2025-06-26 05:39:51,235 calibrate.py _nudge_pos():1806 [1] 225: 0.200 0.0000108 -0.0000073 14 0.04 37.021 -31.429 2003-08-21T21:46:52.023064704 INFO 2025-06-26 05:39:51,263 calibrate.py _nudge_pos():1806 [1] 228: 0.200 0.0000105 0.0000060 34 0.11 14.101 10.130 2003-08-21T21:47:01.022448128 INFO 2025-06-26 05:39:51,418 calibrate.py _nudge_pos():1806 [1] 245: 0.140 0.0000545 0.0002085 11440 38.13 0.212 1.013 2003-08-21T22:25:25.224599552 INFO 2025-06-26 05:39:51,633 calibrate.py _nudge_pos():1862 [1] 247: - - - 1 0.00 - - INFO 2025-06-26 05:39:51,634 calibrate.py _nudge_pos():1868 [1] Points in final series = 22364 WARNING 2025-06-26 05:39:51,655 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:39:51,828 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:39:52,006 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:39:52,137 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:39:52,139 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.233.06/ctd1.nc INFO 2025-06-26 05:39:52,140 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:39:52,140 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:39:52,140 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:39:52,305 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:39:52,441 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:39:52,443 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.233.06/ctd2.nc INFO 2025-06-26 05:39:52,444 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:39:52,444 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:39:52,445 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 05:39:52,453 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.233.06 ERROR 2025-06-26 05:39:52,453 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.233.06 ERROR 2025-06-26 05:39:52,453 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.233.06 ERROR 2025-06-26 05:39:52,453 calibrate.py process_logs():3542 [1] Error processing tailcone: tailcone has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.233.06 INFO 2025-06-26 05:39:52,454 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.233.06/dorado_2003.233.06_cal.nc INFO 2025-06-26 05:39:52,500 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, time INFO 2025-06-26 05:39:52,504 process.py align():251 [1] Alignment steps for 2003.233.06 INFO 2025-06-26 05:39:52,527 align.py process_cal():139 [1] Processing dorado_2003.233.06_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.233.06 INFO 2025-06-26 05:39:52,537 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:39:52,539 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:39:52,563 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:39:52,566 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:39:52,588 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:39:52,590 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:39:52,603 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:39:52,603 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:39:52,612 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:39:52,614 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:39:52,636 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.233.06_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:39:52,638 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:52,660 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.233.06_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:39:52,662 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:52,683 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.233.06_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:39:52,685 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:52,705 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.233.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:52,707 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:52,728 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.233.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:52,731 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:52,751 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.233.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:52,753 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:52,774 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.233.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:52,776 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:52,796 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.233.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:52,799 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:52,819 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.233.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:52,822 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:52,843 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.233.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:52,845 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:52,866 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.233.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:52,869 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:52,889 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.233.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:52,892 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:52,913 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.233.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:52,915 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:52,937 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.233.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:52,939 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:52,961 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.233.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:52,963 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:52,985 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.233.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:52,987 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:53,009 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.233.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:53,011 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:53,033 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.233.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:53,036 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:53,058 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.233.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:53,060 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:53,082 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.233.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:53,084 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:53,110 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:39:53,129 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:39:53,149 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:39:53,160 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.233.06/dorado_2003.233.06_align.nc INFO 2025-06-26 05:39:53,199 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw INFO 2025-06-26 05:39:53,201 process.py resample():273 [1] Resampling steps for 2003.233.06 INFO 2025-06-26 05:39:53,202 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:39:53,221 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.233.06/dorado_2003.233.06_align.nc mission netCDF file INFO 2025-06-26 05:39:53,225 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.233.06/dorado_2003.233.06_align.nc mission netCDF file INFO 2025-06-26 05:39:53,226 resample.py get_mission_start_end():1145 [1] navigation: 2003-08-21T21:11:06.690030080 to 2003-08-21T22:25:48.503004928 (0 days 00:00:00.089993856 before mission_end) INFO 2025-06-26 05:39:53,227 resample.py get_mission_start_end():1145 [1] hs2 : 2003-08-21T21:10:48.981243264 to 2003-08-21T22:25:48.592998784 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:39:53,229 resample.py get_mission_start_end():1145 [1] ctd1 : 2003-08-21T21:11:05.020144512 to 2003-08-21T22:25:48.503004928 (0 days 00:00:00.089993856 before mission_end) INFO 2025-06-26 05:39:53,230 resample.py get_mission_start_end():1145 [1] ctd2 : 2003-08-21T21:11:05.190132864 to 2003-08-21T22:25:48.353015168 (0 days 00:00:00.239983616 before mission_end) INFO 2025-06-26 05:39:53,231 resample.py get_mission_start_end():1145 [1] isus : 2003-08-21T21:12:00.886317312 to 2003-08-21T22:25:47.283088384 (0 days 00:00:01.309910400 before mission_end) INFO 2025-06-26 05:39:53,232 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.233.06/dorado_2003.233.06_align.nc mission netCDF file INFO 2025-06-26 05:39:53,232 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:53,304 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:53,320 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:53,335 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:53,350 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:53,364 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:53,378 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:53,391 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:53,404 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:53,416 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:53,427 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:53,439 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:53,450 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:53,462 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:53,474 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:53,486 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:53,498 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:53,512 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:53,526 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:53,540 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:53,554 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:53,568 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:53,581 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:53,592 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:53,601 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:53,610 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:53,722 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.233.06/dorado_2003.233.06_1S.nc INFO 2025-06-26 05:39:54,399 create_products.py gulper_odv():401 [1] No gulper times found for 2003.233.06 INFO 2025-06-26 05:39:54,399 process.py archive():337 [1] Archiving steps for 2003.233.06 INFO 2025-06-26 05:39:54,399 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.233.06/dorado_2003.233.06, BASE_PATH = /data/auv_data INFO 2025-06-26 05:39:54,400 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.233.06/dorado_2003.233.06 files to /Volumes/AUVCTD/surveys/2003/netcdf INFO 2025-06-26 05:39:54,401 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.233.06_1S.nc INFO 2025-06-26 05:39:54,414 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.233.06/dorado_2003.233.06_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:39:54,415 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.233.06_cal.nc INFO 2025-06-26 05:39:54,438 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.233.06/dorado_2003.233.06_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:39:54,439 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.233.06_align.nc INFO 2025-06-26 05:39:54,461 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.233.06/dorado_2003.233.06_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:39:54,473 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.233.06/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003233/2003.233.06 done. INFO 2025-06-26 05:39:54,485 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.233.06/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003233/2003.233.06 done. INFO 2025-06-26 05:39:54,489 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.233.06/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003233/2003.233.06 done. INFO 2025-06-26 05:39:54,497 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.233.06/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003233/2003.233.06 done. INFO 2025-06-26 05:39:54,516 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.233.06/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003233/2003.233.06 done. INFO 2025-06-26 05:39:54,522 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.233.06/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003233/2003.233.06 done. INFO 2025-06-26 05:39:54,530 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.233.06/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003233/2003.233.06 done. INFO 2025-06-26 05:39:54,531 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:39:54,531 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.233.06/dorado_2003.233.06_processing.log /Volumes/AUVCTD/surveys/2003/netcdf