INFO 2025-06-26 05:38:59,545 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:38:59,545 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Re-portaled 7/8/05 - ctdToUse = ctd1 INFO 2025-06-26 05:38:59,545 process.py process_mission():449 [1] Processing AUVCTD mission 2003.232.02 by user docker_user on host 671049448ece INFO 2025-06-26 05:38:59,545 process.py download_process():165 [1] Download and processing steps for 2003.232.02 INFO 2025-06-26 05:38:59,545 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003232/2003.232.02 INFO 2025-06-26 05:38:59,546 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003232/2003.232.02 to /data/auv_data/dorado/missionlogs/2003.232.02 INFO 2025-06-26 05:39:01,400 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.232.02 INFO 2025-06-26 05:39:01,400 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.232.02/ctdDriver.log (6186795 bytes) INFO 2025-06-26 05:39:01,854 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.232.02/ctdDriver2.log (6186789 bytes) INFO 2025-06-26 05:39:02,312 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.232.02/gps.log (37166 bytes) INFO 2025-06-26 05:39:02,323 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.232.02/hydroscatlog.log (4220474 bytes) INFO 2025-06-26 05:39:02,829 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.232.02/navigation.log (17222486 bytes) INFO 2025-06-26 05:39:04,089 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.232.02/isuslog.log (339541 bytes) INFO 2025-06-26 05:39:04,126 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.232.02/parosci.log (4222934 bytes) INFO 2025-06-26 05:39:04,482 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.232.02/tailCone.log (4222459 bytes) WARNING 2025-06-26 05:39:04,482 logs2netcdfs.py download_process_logs():795 [1] Failed to parse long_name & units from header in file /data/auv_data/dorado/missionlogs/2003.232.02/tailCone.log INFO 2025-06-26 05:39:04,482 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.08 seconds WARNING 2025-06-26 05:39:04,483 process.py download_process():196 [1] No lopc.bin file for 2003.232.02 INFO 2025-06-26 05:39:04,483 process.py calibrate():227 [1] Calibration steps for 2003.232.02 INFO 2025-06-26 05:39:04,613 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.232.02 INFO 2025-06-26 05:39:04,634 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:39:04,635 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:39:06,223 calibrate.py _nudge_pos():1806 [1] 177: 0.170 0.0014499 -0.0044519 11390 37.96 5.672 -21.730 2003-08-20T17:24:18.364747264 INFO 2025-06-26 05:39:06,850 calibrate.py _nudge_pos():1806 [1] 242: 0.130 0.0018305 -0.0038512 11441 38.13 7.129 -18.714 2003-08-20T18:03:30.563610496 INFO 2025-06-26 05:39:07,367 calibrate.py _nudge_pos():1806 [1] 295: 0.070 0.0023346 -0.0039697 11356 37.85 9.160 -19.434 2003-08-20T18:42:13.764460416 INFO 2025-06-26 05:39:07,943 calibrate.py _nudge_pos():1806 [1] 354: 0.030 0.0028217 -0.0036032 11496 38.32 10.935 -17.425 2003-08-20T19:21:30.962981376 INFO 2025-06-26 05:39:08,476 calibrate.py _nudge_pos():1806 [1] 410: 0.170 0.0031231 -0.0021556 11365 37.88 12.241 -10.545 2003-08-20T20:00:18.963502336 INFO 2025-06-26 05:39:08,945 calibrate.py _nudge_pos():1806 [1] 459: 0.170 0.0000646 0.0000580 70 0.23 41.716 46.744 2003-08-20T20:01:20.969254656 INFO 2025-06-26 05:39:08,996 calibrate.py _nudge_pos():1806 [1] 464: 0.120 0.0037902 -0.0011865 11431 38.10 14.769 -5.771 2003-08-20T20:39:31.162365696 INFO 2025-06-26 05:39:09,661 calibrate.py _nudge_pos():1806 [1] 533: 0.060 0.0041411 -0.0010086 11031 36.77 16.719 -5.083 2003-08-20T21:17:25.366572032 INFO 2025-06-26 05:39:10,237 calibrate.py _nudge_pos():1806 [1] 592: 0.140 0.0017669 -0.0002156 5410 18.03 14.546 -2.216 2003-08-20T21:36:25.368476544 INFO 2025-06-26 05:39:10,384 calibrate.py _nudge_pos():1862 [1] 585: - - - 0 0.00 - - INFO 2025-06-26 05:39:10,384 calibrate.py _nudge_pos():1868 [1] Points in final series = 87864 WARNING 2025-06-26 05:39:10,456 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:39:11,091 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:39:11,749 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:39:12,302 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:39:12,305 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.232.02/ctd1.nc INFO 2025-06-26 05:39:12,306 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:39:12,307 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:39:12,307 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:39:12,923 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:39:13,449 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:39:13,451 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.232.02/ctd2.nc INFO 2025-06-26 05:39:13,452 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:39:13,453 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:39:13,453 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 05:39:13,468 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.232.02 ERROR 2025-06-26 05:39:13,468 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.232.02 ERROR 2025-06-26 05:39:13,468 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.232.02 ERROR 2025-06-26 05:39:13,468 calibrate.py process_logs():3542 [1] Error processing tailcone: tailcone has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.232.02 INFO 2025-06-26 05:39:13,469 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.232.02/dorado_2003.232.02_cal.nc INFO 2025-06-26 05:39:13,541 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, time INFO 2025-06-26 05:39:13,545 process.py align():251 [1] Alignment steps for 2003.232.02 INFO 2025-06-26 05:39:13,568 align.py process_cal():139 [1] Processing dorado_2003.232.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.232.02 INFO 2025-06-26 05:39:13,595 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:39:13,599 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:39:13,666 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:39:13,671 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:39:13,734 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:39:13,739 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:39:13,777 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:39:13,777 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:39:13,803 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:39:13,807 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:39:13,870 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.232.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:39:13,873 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:13,929 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.232.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:39:13,933 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:13,992 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.232.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:39:13,996 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:14,053 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.232.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:14,057 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:14,115 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.232.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:14,119 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:14,174 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.232.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:14,178 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:14,235 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.232.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:14,239 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:14,296 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.232.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:14,300 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:14,355 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.232.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:14,359 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:14,415 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.232.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:14,419 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:14,476 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.232.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:14,480 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:14,537 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.232.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:14,541 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:14,597 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.232.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:14,601 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:14,658 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.232.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:14,662 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:14,722 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.232.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:14,726 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:14,784 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.232.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:14,789 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:14,845 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.232.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:14,849 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:14,907 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.232.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:14,912 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:14,968 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.232.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:14,973 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:15,044 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.232.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:39:15,048 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:39:15,110 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:39:15,150 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:39:15,190 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:39:15,204 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.232.02/dorado_2003.232.02_align.nc INFO 2025-06-26 05:39:15,266 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw INFO 2025-06-26 05:39:15,269 process.py resample():273 [1] Resampling steps for 2003.232.02 INFO 2025-06-26 05:39:15,269 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:39:15,290 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.232.02/dorado_2003.232.02_align.nc mission netCDF file INFO 2025-06-26 05:39:15,294 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.232.02/dorado_2003.232.02_align.nc mission netCDF file INFO 2025-06-26 05:39:15,296 resample.py get_mission_start_end():1145 [1] navigation: 2003-08-20T16:43:46.771322880 to 2003-08-20T21:36:39.417514112 (0 days 00:00:00.139990400 before mission_end) INFO 2025-06-26 05:39:15,298 resample.py get_mission_start_end():1145 [1] hs2 : 2003-08-20T16:43:28.692561280 to 2003-08-20T21:36:39.557504512 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:39:15,299 resample.py get_mission_start_end():1145 [1] ctd1 : 2003-08-20T16:43:44.621470080 to 2003-08-20T21:36:39.417514112 (0 days 00:00:00.139990400 before mission_end) INFO 2025-06-26 05:39:15,301 resample.py get_mission_start_end():1145 [1] ctd2 : 2003-08-20T16:43:44.631469312 to 2003-08-20T21:36:39.417514112 (0 days 00:00:00.139990400 before mission_end) INFO 2025-06-26 05:39:15,302 resample.py get_mission_start_end():1145 [1] isus : 2003-08-20T16:44:40.737625856 to 2003-08-20T21:36:38.407583232 (0 days 00:00:01.149921280 before mission_end) INFO 2025-06-26 05:39:15,303 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.232.02/dorado_2003.232.02_align.nc mission netCDF file INFO 2025-06-26 05:39:15,303 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:15,499 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:15,535 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:15,569 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:15,603 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:15,633 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:15,663 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:15,691 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:15,720 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:15,747 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:15,773 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:15,800 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:15,826 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:15,851 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:15,878 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:15,905 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:15,931 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:15,960 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:15,988 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:16,017 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:16,045 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:16,073 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:16,100 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:16,114 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:16,127 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:16,140 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:39:16,322 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.232.02/dorado_2003.232.02_1S.nc INFO 2025-06-26 05:39:17,387 create_products.py gulper_odv():401 [1] No gulper times found for 2003.232.02 INFO 2025-06-26 05:39:17,387 process.py archive():337 [1] Archiving steps for 2003.232.02 INFO 2025-06-26 05:39:17,387 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.232.02/dorado_2003.232.02, BASE_PATH = /data/auv_data INFO 2025-06-26 05:39:17,388 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.232.02/dorado_2003.232.02 files to /Volumes/AUVCTD/surveys/2003/netcdf INFO 2025-06-26 05:39:17,389 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.232.02_1S.nc INFO 2025-06-26 05:39:17,406 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.232.02/dorado_2003.232.02_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:39:17,407 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.232.02_cal.nc INFO 2025-06-26 05:39:17,479 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.232.02/dorado_2003.232.02_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:39:17,480 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.232.02_align.nc INFO 2025-06-26 05:39:17,552 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.232.02/dorado_2003.232.02_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:39:17,577 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.232.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003232/2003.232.02 done. INFO 2025-06-26 05:39:17,599 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.232.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003232/2003.232.02 done. INFO 2025-06-26 05:39:17,604 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.232.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003232/2003.232.02 done. INFO 2025-06-26 05:39:17,620 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.232.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003232/2003.232.02 done. INFO 2025-06-26 05:39:17,669 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.232.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003232/2003.232.02 done. INFO 2025-06-26 05:39:17,676 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.232.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003232/2003.232.02 done. INFO 2025-06-26 05:39:17,694 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.232.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003232/2003.232.02 done. INFO 2025-06-26 05:39:17,694 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:39:17,694 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.232.02/dorado_2003.232.02_processing.log /Volumes/AUVCTD/surveys/2003/netcdf