INFO 2025-06-26 05:37:08,122 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:37:08,122 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Re-portaled 7/7/05 - ctdToUse = ctd1 INFO 2025-06-26 05:37:08,122 process.py process_mission():449 [1] Processing AUVCTD mission 2003.226.05 by user docker_user on host 671049448ece INFO 2025-06-26 05:37:08,122 process.py download_process():165 [1] Download and processing steps for 2003.226.05 INFO 2025-06-26 05:37:08,122 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003226/2003.226.05 INFO 2025-06-26 05:37:08,122 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003226/2003.226.05 to /data/auv_data/dorado/missionlogs/2003.226.05 INFO 2025-06-26 05:37:12,431 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.226.05 INFO 2025-06-26 05:37:12,432 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.226.05/ctdDriver.log (6197707 bytes) INFO 2025-06-26 05:37:13,031 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.226.05/ctdDriver2.log (6197613 bytes) INFO 2025-06-26 05:37:13,487 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.226.05/gps.log (37346 bytes) INFO 2025-06-26 05:37:13,497 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.226.05/hydroscatlog.log (4228094 bytes) INFO 2025-06-26 05:37:13,988 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.226.05/navigation.log (17253062 bytes) INFO 2025-06-26 05:37:15,202 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.226.05/isuslog.log (339797 bytes) INFO 2025-06-26 05:37:15,238 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.226.05/parosci.log (4230278 bytes) INFO 2025-06-26 05:37:15,600 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.226.05/tailCone.log (4229755 bytes) WARNING 2025-06-26 05:37:15,600 logs2netcdfs.py download_process_logs():795 [1] Failed to parse long_name & units from header in file /data/auv_data/dorado/missionlogs/2003.226.05/tailCone.log INFO 2025-06-26 05:37:15,600 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.226.05/biolume.log (4797104 bytes) INFO 2025-06-26 05:37:16,068 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 05:37:16,320 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.89 seconds WARNING 2025-06-26 05:37:16,320 process.py download_process():196 [1] No lopc.bin file for 2003.226.05 INFO 2025-06-26 05:37:16,320 process.py calibrate():227 [1] Calibration steps for 2003.226.05 INFO 2025-06-26 05:37:16,538 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.226.05 INFO 2025-06-26 05:37:16,558 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:37:16,560 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:37:17,948 calibrate.py _nudge_pos():1806 [1] 165: 0.140 0.0038234 -0.0054550 11415 38.05 14.926 -26.567 2003-08-14T15:16:50.210536320 INFO 2025-06-26 05:37:18,506 calibrate.py _nudge_pos():1806 [1] 224: 0.140 0.0000097 -0.0000158 15 0.05 31.018 -62.775 2003-08-14T15:17:51.216357248 INFO 2025-06-26 05:37:18,582 calibrate.py _nudge_pos():1806 [1] 232: 0.090 0.0037582 -0.0067706 11421 38.07 14.663 -32.958 2003-08-14T15:56:02.409399808 INFO 2025-06-26 05:37:18,942 calibrate.py _nudge_pos():1806 [1] 270: 0.040 0.0030661 -0.0057882 11546 38.48 11.832 -27.870 2003-08-14T16:35:08.608674048 INFO 2025-06-26 05:37:19,540 calibrate.py _nudge_pos():1806 [1] 330: 0.190 0.0015525 -0.0054615 11375 37.91 6.081 -26.693 2003-08-14T17:14:02.608784128 INFO 2025-06-26 05:37:20,220 calibrate.py _nudge_pos():1806 [1] 399: 0.130 0.0015264 -0.0047557 11571 38.57 5.877 -22.850 2003-08-14T17:53:44.815591808 INFO 2025-06-26 05:37:20,906 calibrate.py _nudge_pos():1806 [1] 469: 0.080 0.0016710 -0.0034809 11386 37.95 6.537 -16.996 2003-08-14T18:32:51.014866176 INFO 2025-06-26 05:37:21,636 calibrate.py _nudge_pos():1806 [1] 542: 0.040 0.0011093 -0.0022525 10981 36.60 4.499 -11.404 2003-08-14T19:10:39.209484160 INFO 2025-06-26 05:37:22,147 calibrate.py _nudge_pos():1806 [1] 593: 0.110 0.0001197 -0.0003898 5420 18.06 0.984 -3.999 2003-08-14T19:29:33.211799680 INFO 2025-06-26 05:37:22,307 calibrate.py _nudge_pos():1862 [1] 588: - - - 2 0.00 - - INFO 2025-06-26 05:37:22,307 calibrate.py _nudge_pos():1868 [1] Points in final series = 87979 WARNING 2025-06-26 05:37:22,383 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:37:23,018 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds ERROR 2025-06-26 05:37:23,137 calibrate.py process_logs():3548 [1] Error processing ctd1: missing variable 'ctd' INFO 2025-06-26 05:37:23,741 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:37:24,254 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:37:24,256 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.226.05/ctd2.nc INFO 2025-06-26 05:37:24,257 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:37:24,258 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:37:24,258 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 05:37:24,285 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 05:37:25,102 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 29520 31740 50220 50460 51180 67500 106200 129360 146160 195180 196260 199980 205980 255960 260640 267360 271080 274560 278160 279360 301080 331080 339420 348660 364740 379260 395340 396540 397920 399360 400560 401760 406980 436680 450240 480360 647040 680280 693420 759960 765300 774840 821640 829080 880140] INFO 2025-06-26 05:37:25,254 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 05:37:25,260 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 05:37:25,261 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.226.05 ERROR 2025-06-26 05:37:25,261 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.226.05 ERROR 2025-06-26 05:37:25,261 calibrate.py process_logs():3542 [1] Error processing tailcone: tailcone has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.226.05 INFO 2025-06-26 05:37:25,262 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.226.05/dorado_2003.226.05_cal.nc INFO 2025-06-26 05:37:25,333 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_dissolvedO2, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, time INFO 2025-06-26 05:37:25,337 process.py align():251 [1] Alignment steps for 2003.226.05 INFO 2025-06-26 05:37:25,362 align.py process_cal():139 [1] Processing dorado_2003.226.05_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.226.05 INFO 2025-06-26 05:37:25,388 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:37:25,392 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:37:25,458 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:37:25,462 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:37:25,527 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:37:25,531 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:37:25,570 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:37:25,570 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:37:25,597 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:37:25,601 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:37:25,663 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.226.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:37:25,667 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:37:25,722 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.226.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:37:25,726 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:37:25,782 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.226.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:37:25,786 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:37:25,848 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:37:25,911 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:37:25,972 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:37:26,040 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:37:26,102 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:37:26,165 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:37:26,223 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.226.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:37:26,227 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:37:26,284 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.226.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:37:26,288 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:37:26,345 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.226.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:37:26,349 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:37:26,405 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.226.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:37:26,409 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:37:26,465 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.226.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:37:26,471 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:37:26,539 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.226.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:37:26,543 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:37:26,599 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.226.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:37:26,603 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:37:26,665 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:37:26,707 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:37:26,747 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:37:26,790 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 05:37:26,806 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.226.05/dorado_2003.226.05_align.nc INFO 2025-06-26 05:37:26,868 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_latitude, ctd1_longitude, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw INFO 2025-06-26 05:37:26,870 process.py resample():273 [1] Resampling steps for 2003.226.05 INFO 2025-06-26 05:37:26,871 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:37:26,892 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.226.05/dorado_2003.226.05_align.nc mission netCDF file INFO 2025-06-26 05:37:26,897 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.226.05/dorado_2003.226.05_align.nc mission netCDF file INFO 2025-06-26 05:37:26,898 resample.py get_mission_start_end():1145 [1] navigation: 2003-08-14T14:36:25.816618752 to 2003-08-14T19:29:49.630674816 (0 days 00:00:00.069995264 before mission_end) INFO 2025-06-26 05:37:26,900 resample.py get_mission_start_end():1145 [1] hs2 : 2003-08-14T14:36:07.907845632 to 2003-08-14T19:29:49.630674816 (0 days 00:00:00.069995264 before mission_end) INFO 2025-06-26 05:37:26,901 resample.py get_mission_start_end():1145 [1] ctd1 : 2003-08-14T14:36:23.916748928 to 2003-08-14T19:29:49.640674176 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 05:37:26,903 resample.py get_mission_start_end():1145 [1] ctd2 : 2003-08-14T14:36:24.016742144 to 2003-08-14T19:29:49.700670080 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:37:26,904 resample.py get_mission_start_end():1145 [1] isus : 2003-08-14T14:37:21.022836864 to 2003-08-14T19:29:49.450687232 (0 days 00:00:00.249982848 before mission_end) INFO 2025-06-26 05:37:26,905 resample.py get_mission_start_end():1145 [1] biolume : 2003-08-14T14:36:03.208133376 to 2003-08-14T19:29:48.810696832 (0 days 00:00:00.889973248 before mission_end) INFO 2025-06-26 05:37:26,906 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.226.05/dorado_2003.226.05_align.nc mission netCDF file INFO 2025-06-26 05:37:26,906 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:37:27,103 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:37:27,139 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:37:27,173 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:37:27,205 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:37:27,235 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:37:27,265 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:37:27,294 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:37:27,322 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:37:27,349 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:37:27,377 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:37:27,404 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:37:27,431 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:37:27,457 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:37:27,486 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:37:27,515 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:37:27,543 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:37:27,570 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:37:27,599 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:37:27,626 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:37:27,640 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:37:27,653 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:37:27,665 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:37:27,679 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter WARNING 2025-06-26 05:37:27,833 resample.py dorado_global_metadata():177 [1] No comment for pitch correction in ctd1_depth for mission 2003.226.05 INFO 2025-06-26 05:37:27,858 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.226.05/dorado_2003.226.05_1S.nc INFO 2025-06-26 05:37:29,055 create_products.py gulper_odv():401 [1] No gulper times found for 2003.226.05 INFO 2025-06-26 05:37:29,055 process.py archive():337 [1] Archiving steps for 2003.226.05 INFO 2025-06-26 05:37:29,055 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.226.05/dorado_2003.226.05, BASE_PATH = /data/auv_data INFO 2025-06-26 05:37:29,055 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.226.05/dorado_2003.226.05 files to /Volumes/AUVCTD/surveys/2003/netcdf INFO 2025-06-26 05:37:29,057 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.226.05_1S.nc INFO 2025-06-26 05:37:29,076 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.226.05/dorado_2003.226.05_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:37:29,077 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.226.05_cal.nc INFO 2025-06-26 05:37:29,144 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.226.05/dorado_2003.226.05_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:37:29,145 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.226.05_align.nc INFO 2025-06-26 05:37:29,213 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.226.05/dorado_2003.226.05_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:37:29,236 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.226.05/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003226/2003.226.05 done. INFO 2025-06-26 05:37:29,257 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.226.05/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003226/2003.226.05 done. INFO 2025-06-26 05:37:29,261 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.226.05/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003226/2003.226.05 done. INFO 2025-06-26 05:37:29,277 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.226.05/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003226/2003.226.05 done. INFO 2025-06-26 05:37:29,331 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.226.05/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003226/2003.226.05 done. INFO 2025-06-26 05:37:29,336 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.226.05/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003226/2003.226.05 done. INFO 2025-06-26 05:37:29,353 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.226.05/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003226/2003.226.05 done. INFO 2025-06-26 05:37:29,406 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.226.05/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003226/2003.226.05 done. INFO 2025-06-26 05:37:29,406 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:37:29,407 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.226.05/dorado_2003.226.05_processing.log /Volumes/AUVCTD/surveys/2003/netcdf