INFO 2025-06-26 05:34:52,626 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:34:52,626 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled to SSDS on 12 March 2014, but did not process for missing hydroscat cal file - ctdToUse = ctd1 INFO 2025-06-26 05:34:52,627 process.py process_mission():449 [1] Processing AUVCTD mission 2003.222.02 by user docker_user on host 671049448ece INFO 2025-06-26 05:34:52,627 process.py download_process():165 [1] Download and processing steps for 2003.222.02 INFO 2025-06-26 05:34:52,627 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003222/2003.222.02 INFO 2025-06-26 05:34:52,627 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003222/2003.222.02 to /data/auv_data/dorado/missionlogs/2003.222.02 INFO 2025-06-26 05:34:55,645 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.222.02 INFO 2025-06-26 05:34:55,645 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.222.02/ctdDriver.log (5515707 bytes) INFO 2025-06-26 05:34:56,062 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.222.02/ctdDriver2.log (5515701 bytes) INFO 2025-06-26 05:34:56,467 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.222.02/gps.log (29606 bytes) INFO 2025-06-26 05:34:56,477 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.222.02/hydroscatlog.log (3763274 bytes) INFO 2025-06-26 05:34:56,911 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.222.02/navigation.log (15355586 bytes) INFO 2025-06-26 05:34:58,019 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.222.02/isuslog.log (301429 bytes) INFO 2025-06-26 05:34:58,054 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.222.02/parosci.log (3765590 bytes) INFO 2025-06-26 05:34:58,375 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.222.02/tailCone.log (3765163 bytes) WARNING 2025-06-26 05:34:58,375 logs2netcdfs.py download_process_logs():795 [1] Failed to parse long_name & units from header in file /data/auv_data/dorado/missionlogs/2003.222.02/tailCone.log INFO 2025-06-26 05:34:58,375 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.222.02/biolume.log (4270240 bytes) INFO 2025-06-26 05:34:58,789 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 05:34:59,009 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.36 seconds WARNING 2025-06-26 05:34:59,010 process.py download_process():196 [1] No lopc.bin file for 2003.222.02 INFO 2025-06-26 05:34:59,010 process.py calibrate():227 [1] Calibration steps for 2003.222.02 INFO 2025-06-26 05:34:59,150 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.222.02 INFO 2025-06-26 05:34:59,169 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:34:59,171 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:35:00,562 calibrate.py _nudge_pos():1806 [1] 166: 0.160 -0.0001345 0.0001108 12695 42.31 -0.471 0.485 2003-08-10T06:20:12.088527232 INFO 2025-06-26 05:35:01,280 calibrate.py _nudge_pos():1806 [1] 243: 0.130 0.0002636 0.0002138 12971 43.23 0.904 0.916 2003-08-10T07:04:42.285606144 INFO 2025-06-26 05:35:01,805 calibrate.py _nudge_pos():1806 [1] 299: 0.100 0.0003937 0.0001290 12296 40.98 1.425 0.583 2003-08-10T07:46:36.483371904 INFO 2025-06-26 05:35:02,237 calibrate.py _nudge_pos():1806 [1] 345: 0.080 0.0004685 0.0004414 13726 45.75 1.519 1.788 2003-08-10T08:33:06.682230144 INFO 2025-06-26 05:35:02,735 calibrate.py _nudge_pos():1806 [1] 397: 0.040 0.0022074 0.0015633 13636 45.45 7.208 6.373 2003-08-10T09:19:24.891909760 INFO 2025-06-26 05:35:03,211 calibrate.py _nudge_pos():1806 [1] 447: 0.050 0.0000203 0.0000115 20 0.06 47.573 33.532 2003-08-10T09:20:17.888279168 INFO 2025-06-26 05:35:03,386 calibrate.py _nudge_pos():1806 [1] 465: 0.180 0.0020960 0.0010457 10740 35.80 8.694 5.413 2003-08-10T09:56:22.889966464 INFO 2025-06-26 05:35:03,554 calibrate.py _nudge_pos():1862 [1] 459: - - - 2 0.00 - - INFO 2025-06-26 05:35:03,554 calibrate.py _nudge_pos():1868 [1] Points in final series = 78298 WARNING 2025-06-26 05:35:03,626 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz WARNING 2025-06-26 05:35:03,684 calibrate.py _hs2_process():2289 [1] Cannot process HS2 data: [Errno 2] No such file or directory: '/data/auv_data/dorado/missionlogs/2003.222.02/hs2Calibration.dat' INFO 2025-06-26 05:35:04,262 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:35:04,742 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:35:04,744 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.222.02/ctd1.nc INFO 2025-06-26 05:35:04,745 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:35:04,745 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:35:04,746 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:35:05,292 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:35:05,794 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:35:05,796 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.222.02/ctd2.nc INFO 2025-06-26 05:35:05,797 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:35:05,798 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:35:05,798 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 05:35:05,823 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 05:35:06,549 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 900 76560 108120 144540 145740 290460 336060 363540 365760 378300 396240 423180 435060 454380 458460 553740 576240 581340 588780 607860 640680 644400 644880 652560 652800 653220 654480 655200 656160 656161 659160 661200 675840 695520 890700 899760] INFO 2025-06-26 05:35:06,684 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 05:35:06,690 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 05:35:06,691 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.222.02 ERROR 2025-06-26 05:35:06,691 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.222.02 ERROR 2025-06-26 05:35:06,691 calibrate.py process_logs():3542 [1] Error processing tailcone: tailcone has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.222.02 INFO 2025-06-26 05:35:06,692 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.222.02/dorado_2003.222.02_cal.nc INFO 2025-06-26 05:35:06,755 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, time INFO 2025-06-26 05:35:06,759 process.py align():251 [1] Alignment steps for 2003.222.02 INFO 2025-06-26 05:35:06,781 align.py process_cal():139 [1] Processing dorado_2003.222.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.222.02 INFO 2025-06-26 05:35:06,806 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:35:06,809 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:35:06,869 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:35:06,873 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:35:06,929 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:35:06,933 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:35:06,968 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:35:06,968 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:35:06,993 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:35:06,997 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:35:07,054 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.222.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:35:07,058 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:35:07,108 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.222.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:35:07,112 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:35:07,164 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.222.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:35:07,167 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:35:07,218 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.222.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:35:07,222 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:35:07,273 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.222.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:35:07,276 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:35:07,327 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.222.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:35:07,331 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:35:07,383 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.222.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:35:07,386 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:35:07,437 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.222.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:35:07,441 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:35:07,494 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.222.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:35:07,497 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:35:07,549 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.222.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:35:07,552 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:35:07,605 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.222.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:35:07,608 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:35:07,659 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.222.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:35:07,663 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:35:07,714 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.222.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:35:07,718 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:35:07,769 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.222.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:35:07,773 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:35:07,825 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.222.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:35:07,829 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:35:07,881 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.222.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:35:07,885 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:35:07,937 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.222.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:35:07,941 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:35:07,997 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:35:08,033 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:35:08,070 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:35:08,108 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 05:35:08,124 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.222.02/dorado_2003.222.02_align.nc INFO 2025-06-26 05:35:08,178 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw INFO 2025-06-26 05:35:08,180 process.py resample():273 [1] Resampling steps for 2003.222.02 INFO 2025-06-26 05:35:08,181 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:35:08,200 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.222.02/dorado_2003.222.02_align.nc mission netCDF file INFO 2025-06-26 05:35:08,204 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.222.02/dorado_2003.222.02_align.nc mission netCDF file INFO 2025-06-26 05:35:08,206 resample.py get_mission_start_end():1145 [1] navigation: 2003-08-10T05:35:30.692215424 to 2003-08-10T09:56:38.288911616 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:35:08,207 resample.py get_mission_start_end():1145 [1] ctd1 : 2003-08-10T05:35:29.352307200 to 2003-08-10T09:56:38.268912896 (0 days 00:00:00.019998720 before mission_end) INFO 2025-06-26 05:35:08,209 resample.py get_mission_start_end():1145 [1] ctd2 : 2003-08-10T05:35:29.362306560 to 2003-08-10T09:56:38.268912896 (0 days 00:00:00.019998720 before mission_end) INFO 2025-06-26 05:35:08,210 resample.py get_mission_start_end():1145 [1] isus : 2003-08-10T05:36:26.228411008 to 2003-08-10T09:56:36.619025920 (0 days 00:00:01.669885696 before mission_end) INFO 2025-06-26 05:35:08,212 resample.py get_mission_start_end():1145 [1] biolume : 2003-08-10T05:35:08.453704576 to 2003-08-10T09:56:37.108958080 (0 days 00:00:01.179953536 before mission_end) INFO 2025-06-26 05:35:08,212 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.222.02/dorado_2003.222.02_align.nc mission netCDF file INFO 2025-06-26 05:35:08,213 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:35:08,393 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:35:08,425 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:35:08,457 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:35:08,488 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:35:08,515 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:35:08,540 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:35:08,565 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:35:08,590 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:35:08,616 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:35:08,640 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:35:08,665 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:35:08,689 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:35:08,714 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:35:08,742 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:35:08,768 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:35:08,794 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:35:08,821 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:35:08,847 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:35:08,873 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:35:08,886 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:35:08,899 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:35:08,910 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:35:08,924 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 05:35:09,094 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.222.02/dorado_2003.222.02_1S.nc INFO 2025-06-26 05:35:10,407 create_products.py gulper_odv():401 [1] No gulper times found for 2003.222.02 INFO 2025-06-26 05:35:10,407 process.py archive():337 [1] Archiving steps for 2003.222.02 INFO 2025-06-26 05:35:10,407 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.222.02/dorado_2003.222.02, BASE_PATH = /data/auv_data INFO 2025-06-26 05:35:10,408 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.222.02/dorado_2003.222.02 files to /Volumes/AUVCTD/surveys/2003/netcdf INFO 2025-06-26 05:35:10,409 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.222.02_1S.nc INFO 2025-06-26 05:35:10,425 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.222.02/dorado_2003.222.02_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:35:10,426 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.222.02_cal.nc INFO 2025-06-26 05:35:10,487 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.222.02/dorado_2003.222.02_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:35:10,488 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.222.02_align.nc INFO 2025-06-26 05:35:10,543 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.222.02/dorado_2003.222.02_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:35:10,566 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.222.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003222/2003.222.02 done. INFO 2025-06-26 05:35:10,586 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.222.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003222/2003.222.02 done. INFO 2025-06-26 05:35:10,591 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.222.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003222/2003.222.02 done. INFO 2025-06-26 05:35:10,606 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.222.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003222/2003.222.02 done. INFO 2025-06-26 05:35:10,654 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.222.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003222/2003.222.02 done. INFO 2025-06-26 05:35:10,660 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.222.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003222/2003.222.02 done. INFO 2025-06-26 05:35:10,675 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.222.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003222/2003.222.02 done. INFO 2025-06-26 05:35:10,726 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.222.02/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003222/2003.222.02 done. INFO 2025-06-26 05:35:10,727 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:35:10,727 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.222.02/dorado_2003.222.02_processing.log /Volumes/AUVCTD/surveys/2003/netcdf