INFO 2025-06-26 05:34:10,102 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:34:10,102 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled files exist in archive, but not processed by reprocess_surveys.m - ctdToUse = ctd1 INFO 2025-06-26 05:34:10,102 process.py process_mission():449 [1] Processing AUVCTD mission 2003.218.04 by user docker_user on host 671049448ece INFO 2025-06-26 05:34:10,102 process.py download_process():165 [1] Download and processing steps for 2003.218.04 INFO 2025-06-26 05:34:10,102 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003218/2003.218.04 INFO 2025-06-26 05:34:10,102 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003218/2003.218.04 to /data/auv_data/dorado/missionlogs/2003.218.04 INFO 2025-06-26 05:34:15,431 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.218.04 INFO 2025-06-26 05:34:15,431 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.218.04/ctdDriver.log (5999003 bytes) INFO 2025-06-26 05:34:15,870 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.218.04/ctdDriver2.log (5998909 bytes) INFO 2025-06-26 05:34:16,302 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.218.04/gps.log (38906 bytes) INFO 2025-06-26 05:34:16,314 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.218.04/hydroscatlog.log (4092374 bytes) INFO 2025-06-26 05:34:16,803 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.218.04/navigation.log (16699950 bytes) INFO 2025-06-26 05:34:18,010 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.218.04/isuslog.log (328917 bytes) INFO 2025-06-26 05:34:18,047 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.218.04/parosci.log (4094774 bytes) INFO 2025-06-26 05:34:18,418 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.218.04/tailCone.log (4094443 bytes) WARNING 2025-06-26 05:34:18,419 logs2netcdfs.py download_process_logs():795 [1] Failed to parse long_name & units from header in file /data/auv_data/dorado/missionlogs/2003.218.04/tailCone.log INFO 2025-06-26 05:34:18,419 logs2netcdfs.py download_process_logs():807 [1] Time to process: 2.99 seconds WARNING 2025-06-26 05:34:18,419 process.py download_process():196 [1] No lopc.bin file for 2003.218.04 INFO 2025-06-26 05:34:18,419 process.py calibrate():227 [1] Calibration steps for 2003.218.04 INFO 2025-06-26 05:34:18,545 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.218.04 INFO 2025-06-26 05:34:18,565 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:34:18,567 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:34:20,272 calibrate.py _nudge_pos():1806 [1] 185: 0.050 0.0039192 -0.0047269 11511 38.37 15.171 -22.830 2003-08-06T16:56:53.393184896 INFO 2025-06-26 05:34:20,785 calibrate.py _nudge_pos():1806 [1] 237: 0.190 0.0030309 -0.0038461 11315 37.71 11.935 -18.898 2003-08-06T17:35:28.394596480 INFO 2025-06-26 05:34:21,404 calibrate.py _nudge_pos():1806 [1] 303: 0.140 0.0024957 -0.0023768 11560 38.53 9.618 -11.430 2003-08-06T18:15:05.601746560 INFO 2025-06-26 05:34:21,891 calibrate.py _nudge_pos():1806 [1] 355: 0.090 0.0017021 -0.0019665 11356 37.85 6.677 -9.627 2003-08-06T18:53:47.792665600 INFO 2025-06-26 05:34:22,254 calibrate.py _nudge_pos():1806 [1] 393: 0.090 0.0001561 -0.0000880 25 0.08 289.667 -203.877 2003-08-06T18:54:29.799787904 INFO 2025-06-26 05:34:22,330 calibrate.py _nudge_pos():1806 [1] 401: 0.090 0.0000102 -0.0000030 20 0.06 23.856 -8.839 2003-08-06T18:54:40.799034368 INFO 2025-06-26 05:34:22,359 calibrate.py _nudge_pos():1806 [1] 404: 0.100 0.0000234 0.0000030 20 0.06 54.747 8.848 2003-08-06T18:54:46.798623488 INFO 2025-06-26 05:34:22,410 calibrate.py _nudge_pos():1806 [1] 409: 0.060 0.0021863 -0.0018520 12071 40.23 8.068 -8.530 2003-08-06T19:35:04.992965760 INFO 2025-06-26 05:34:23,078 calibrate.py _nudge_pos():1806 [1] 479: 0.010 0.0022503 -0.0020453 11386 37.95 8.803 -9.987 2003-08-06T20:14:11.192240128 INFO 2025-06-26 05:34:23,641 calibrate.py _nudge_pos():1806 [1] 534: 0.010 0.0000098 -0.0000026 55 0.18 8.104 -2.671 2003-08-06T20:15:16.197786880 INFO 2025-06-26 05:34:23,689 calibrate.py _nudge_pos():1806 [1] 539: 0.140 0.0026855 -0.0014167 10790 35.96 11.084 -7.299 2003-08-06T20:51:18.199679616 INFO 2025-06-26 05:34:23,823 calibrate.py _nudge_pos():1806 [1] 553: 0.140 0.0000063 0.0000171 75 0.25 3.786 12.881 2003-08-06T20:51:47.197693056 INFO 2025-06-26 05:34:24,097 calibrate.py _nudge_pos():1806 [1] 581: 0.170 -0.0002311 0.0002814 2000 6.66 -5.148 7.827 2003-08-06T20:58:54.198441600 INFO 2025-06-26 05:34:24,633 calibrate.py _nudge_pos():1862 [1] 614: - - - 2 0.00 - - INFO 2025-06-26 05:34:24,633 calibrate.py _nudge_pos():1868 [1] Points in final series = 85110 WARNING 2025-06-26 05:34:24,770 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz WARNING 2025-06-26 05:34:24,830 calibrate.py _hs2_process():2289 [1] Cannot process HS2 data: [Errno 2] No such file or directory: '/data/auv_data/dorado/missionlogs/2003.218.04/hs2Calibration.dat' INFO 2025-06-26 05:34:25,448 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:34:25,942 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:34:25,944 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.218.04/ctd1.nc INFO 2025-06-26 05:34:25,945 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:34:25,946 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:34:25,946 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:34:26,534 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:34:27,036 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:34:27,039 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.218.04/ctd2.nc INFO 2025-06-26 05:34:27,040 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:34:27,041 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:34:27,041 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 05:34:27,055 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.218.04 ERROR 2025-06-26 05:34:27,055 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.218.04 ERROR 2025-06-26 05:34:27,055 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.218.04 ERROR 2025-06-26 05:34:27,055 calibrate.py process_logs():3542 [1] Error processing tailcone: tailcone has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.218.04 INFO 2025-06-26 05:34:27,056 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.218.04/dorado_2003.218.04_cal.nc INFO 2025-06-26 05:34:27,118 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, time INFO 2025-06-26 05:34:27,121 process.py align():251 [1] Alignment steps for 2003.218.04 INFO 2025-06-26 05:34:27,141 align.py process_cal():139 [1] Processing dorado_2003.218.04_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.218.04 INFO 2025-06-26 05:34:27,167 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:34:27,171 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:34:27,235 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:34:27,240 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:34:27,301 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:34:27,305 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:34:27,343 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:34:27,344 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:34:27,369 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:34:27,373 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:34:27,433 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.218.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:27,437 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:27,492 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.218.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:27,496 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:27,549 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.218.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:27,553 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:27,607 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.218.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:27,611 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:27,665 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.218.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:27,669 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:27,723 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.218.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:27,727 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:27,781 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.218.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:27,785 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:27,838 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.218.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:27,842 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:27,896 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.218.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:27,900 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:27,956 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.218.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:27,959 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:28,015 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.218.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:28,019 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:28,075 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.218.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:28,080 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:28,134 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.218.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:28,138 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:28,193 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.218.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:28,197 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:28,251 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.218.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:28,256 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:28,311 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.218.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:28,315 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:28,370 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.218.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:28,373 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:28,432 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:34:28,471 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:34:28,509 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:34:28,524 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.218.04/dorado_2003.218.04_align.nc INFO 2025-06-26 05:34:28,571 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw INFO 2025-06-26 05:34:28,573 process.py resample():273 [1] Resampling steps for 2003.218.04 INFO 2025-06-26 05:34:28,574 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:34:28,590 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.218.04/dorado_2003.218.04_align.nc mission netCDF file INFO 2025-06-26 05:34:28,594 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.218.04/dorado_2003.218.04_align.nc mission netCDF file INFO 2025-06-26 05:34:28,595 resample.py get_mission_start_end():1145 [1] navigation: 2003-08-06T16:15:49.201993600 to 2003-08-06T20:59:48.624713088 (0 days 00:00:00.009999360 before mission_end) INFO 2025-06-26 05:34:28,596 resample.py get_mission_start_end():1145 [1] ctd1 : 2003-08-06T16:15:47.442114176 to 2003-08-06T20:59:48.634712448 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:34:28,598 resample.py get_mission_start_end():1145 [1] ctd2 : 2003-08-06T16:15:47.652099712 to 2003-08-06T20:59:48.624713088 (0 days 00:00:00.009999360 before mission_end) INFO 2025-06-26 05:34:28,599 resample.py get_mission_start_end():1145 [1] isus : 2003-08-06T16:16:43.448277376 to 2003-08-06T20:59:47.554786432 (0 days 00:00:01.079926016 before mission_end) INFO 2025-06-26 05:34:28,600 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.218.04/dorado_2003.218.04_align.nc mission netCDF file INFO 2025-06-26 05:34:28,600 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:28,791 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:28,826 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:28,862 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:28,896 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:28,925 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:28,951 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:28,979 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:29,005 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:29,040 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:29,075 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:29,110 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:29,141 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:29,170 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:29,200 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:29,229 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:29,258 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:29,286 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:29,315 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:29,344 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:29,359 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:29,372 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:29,384 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:29,561 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.218.04/dorado_2003.218.04_1S.nc INFO 2025-06-26 05:34:30,646 create_products.py gulper_odv():401 [1] No gulper times found for 2003.218.04 INFO 2025-06-26 05:34:30,646 process.py archive():337 [1] Archiving steps for 2003.218.04 INFO 2025-06-26 05:34:30,647 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.218.04/dorado_2003.218.04, BASE_PATH = /data/auv_data INFO 2025-06-26 05:34:30,648 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.218.04/dorado_2003.218.04 files to /Volumes/AUVCTD/surveys/2003/netcdf INFO 2025-06-26 05:34:30,648 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.218.04_1S.nc INFO 2025-06-26 05:34:30,665 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.218.04/dorado_2003.218.04_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:34:30,666 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.218.04_cal.nc INFO 2025-06-26 05:34:30,730 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.218.04/dorado_2003.218.04_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:34:30,731 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.218.04_align.nc INFO 2025-06-26 05:34:30,786 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.218.04/dorado_2003.218.04_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:34:30,811 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.218.04/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003218/2003.218.04 done. INFO 2025-06-26 05:34:30,834 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.218.04/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003218/2003.218.04 done. INFO 2025-06-26 05:34:30,838 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.218.04/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003218/2003.218.04 done. INFO 2025-06-26 05:34:30,854 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.218.04/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003218/2003.218.04 done. INFO 2025-06-26 05:34:30,908 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.218.04/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003218/2003.218.04 done. INFO 2025-06-26 05:34:30,917 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.218.04/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003218/2003.218.04 done. INFO 2025-06-26 05:34:30,935 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.218.04/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003218/2003.218.04 done. INFO 2025-06-26 05:34:30,935 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:34:30,935 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.218.04/dorado_2003.218.04_processing.log /Volumes/AUVCTD/surveys/2003/netcdf