INFO 2025-06-26 05:33:48,906 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:33:48,906 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled files exist in archive, but not processed by reprocess_surveys.m - ctdToUse = ctd1 INFO 2025-06-26 05:33:48,906 process.py process_mission():449 [1] Processing AUVCTD mission 2003.216.03 by user docker_user on host 671049448ece INFO 2025-06-26 05:33:48,906 process.py download_process():165 [1] Download and processing steps for 2003.216.03 INFO 2025-06-26 05:33:48,906 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003216/2003.216.03 INFO 2025-06-26 05:33:48,906 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003216/2003.216.03 to /data/auv_data/dorado/missionlogs/2003.216.03 INFO 2025-06-26 05:33:54,624 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.216.03 INFO 2025-06-26 05:33:54,624 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.216.03/ctdDriver.log (6224723 bytes) INFO 2025-06-26 05:33:55,067 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.216.03/ctdDriver2.log (6224453 bytes) INFO 2025-06-26 05:33:55,518 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.216.03/gps.log (38126 bytes) INFO 2025-06-26 05:33:55,530 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.216.03/hydroscatlog.log (4246694 bytes) INFO 2025-06-26 05:33:56,043 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.216.03/navigation.log (17329894 bytes) INFO 2025-06-26 05:33:57,258 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.216.03/isuslog.log (340885 bytes) INFO 2025-06-26 05:33:57,295 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.216.03/parosci.log (4248998 bytes) INFO 2025-06-26 05:33:57,649 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.216.03/tailCone.log (4248715 bytes) WARNING 2025-06-26 05:33:57,649 logs2netcdfs.py download_process_logs():795 [1] Failed to parse long_name & units from header in file /data/auv_data/dorado/missionlogs/2003.216.03/tailCone.log INFO 2025-06-26 05:33:57,649 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.02 seconds WARNING 2025-06-26 05:33:57,649 process.py download_process():196 [1] No lopc.bin file for 2003.216.03 INFO 2025-06-26 05:33:57,649 process.py calibrate():227 [1] Calibration steps for 2003.216.03 INFO 2025-06-26 05:33:57,776 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.216.03 INFO 2025-06-26 05:33:57,796 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:33:57,798 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:33:59,200 calibrate.py _nudge_pos():1806 [1] 166: 0.130 0.0021841 -0.0050478 11441 38.13 8.506 -24.529 2003-08-04T17:51:34.486773888 INFO 2025-06-26 05:33:59,717 calibrate.py _nudge_pos():1806 [1] 220: 0.080 0.0020425 -0.0047125 11496 38.32 7.916 -22.790 2003-08-04T18:30:46.685637120 INFO 2025-06-26 05:34:00,388 calibrate.py _nudge_pos():1806 [1] 290: 0.030 0.0021283 -0.0035825 11446 38.15 8.284 -17.401 2003-08-04T19:10:04.884089472 INFO 2025-06-26 05:34:00,857 calibrate.py _nudge_pos():1806 [1] 340: 0.180 0.0015369 -0.0032576 11335 37.78 6.041 -15.977 2003-08-04T19:48:40.885432576 INFO 2025-06-26 05:34:01,531 calibrate.py _nudge_pos():1806 [1] 410: 0.120 0.0018373 -0.0026080 11536 38.45 7.094 -12.569 2003-08-04T20:28:17.092651264 INFO 2025-06-26 05:34:02,054 calibrate.py _nudge_pos():1806 [1] 462: 0.080 0.0025011 -0.0024221 11326 37.75 9.836 -11.889 2003-08-04T21:06:53.283981184 INFO 2025-06-26 05:34:02,730 calibrate.py _nudge_pos():1806 [1] 530: 0.020 0.0033512 -0.0016944 11006 36.68 13.561 -8.559 2003-08-04T21:44:41.488598528 INFO 2025-06-26 05:34:03,192 calibrate.py _nudge_pos():1806 [1] 577: 0.030 0.0000152 0.0000067 20 0.06 35.534 19.683 2003-08-04T21:45:31.485173632 INFO 2025-06-26 05:34:03,212 calibrate.py _nudge_pos():1806 [1] 579: 0.030 -0.0000253 0.0000082 15 0.05 -80.552 32.715 2003-08-04T21:45:35.484899584 INFO 2025-06-26 05:34:03,222 calibrate.py _nudge_pos():1806 [1] 580: 0.020 0.0000082 -0.0000388 15 0.05 26.178 -154.169 2003-08-04T21:45:38.484694144 INFO 2025-06-26 05:34:03,301 calibrate.py _nudge_pos():1806 [1] 588: 0.100 0.0008468 0.0002502 5820 19.40 6.480 2.390 2003-08-04T22:05:11.484338048 INFO 2025-06-26 05:34:03,638 calibrate.py _nudge_pos():1862 [1] 601: - - - 0 0.00 - - INFO 2025-06-26 05:34:03,638 calibrate.py _nudge_pos():1868 [1] Points in final series = 88412 WARNING 2025-06-26 05:34:03,721 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz WARNING 2025-06-26 05:34:03,783 calibrate.py _hs2_process():2289 [1] Cannot process HS2 data: [Errno 2] No such file or directory: '/data/auv_data/dorado/missionlogs/2003.216.03/hs2Calibration.dat' INFO 2025-06-26 05:34:04,424 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:34:04,944 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:34:04,946 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.216.03/ctd1.nc INFO 2025-06-26 05:34:04,947 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:34:04,947 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:34:04,947 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:34:05,564 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:34:06,079 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:34:06,081 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.216.03/ctd2.nc INFO 2025-06-26 05:34:06,083 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:34:06,083 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:34:06,083 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 05:34:06,097 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.216.03 ERROR 2025-06-26 05:34:06,097 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.216.03 ERROR 2025-06-26 05:34:06,097 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.216.03 ERROR 2025-06-26 05:34:06,097 calibrate.py process_logs():3542 [1] Error processing tailcone: tailcone has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.216.03 INFO 2025-06-26 05:34:06,098 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.216.03/dorado_2003.216.03_cal.nc INFO 2025-06-26 05:34:06,160 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, time INFO 2025-06-26 05:34:06,163 process.py align():251 [1] Alignment steps for 2003.216.03 INFO 2025-06-26 05:34:06,185 align.py process_cal():139 [1] Processing dorado_2003.216.03_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.216.03 INFO 2025-06-26 05:34:06,212 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:34:06,216 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:34:06,283 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:34:06,287 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:34:06,354 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:34:06,358 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:34:06,396 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:34:06,396 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:34:06,423 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:34:06,427 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:34:06,491 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.216.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:06,494 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:06,551 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.216.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:06,555 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:06,611 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.216.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:06,615 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:06,671 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.216.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:06,676 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:06,740 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.216.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:06,744 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:06,800 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.216.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:06,804 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:06,862 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.216.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:06,865 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:06,921 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.216.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:06,925 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:06,982 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.216.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:06,986 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:07,043 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.216.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:07,046 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:07,103 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.216.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:07,107 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:07,165 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.216.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:07,169 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:07,227 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.216.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:07,231 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:07,287 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.216.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:07,292 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:07,348 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.216.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:07,352 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:07,408 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.216.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:07,413 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:07,469 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.216.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:07,472 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:07,534 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:34:07,574 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:34:07,613 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:34:07,627 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.216.03/dorado_2003.216.03_align.nc INFO 2025-06-26 05:34:07,677 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw INFO 2025-06-26 05:34:07,680 process.py resample():273 [1] Resampling steps for 2003.216.03 INFO 2025-06-26 05:34:07,681 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:34:07,698 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.216.03/dorado_2003.216.03_align.nc mission netCDF file INFO 2025-06-26 05:34:07,702 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.216.03/dorado_2003.216.03_align.nc mission netCDF file INFO 2025-06-26 05:34:07,703 resample.py get_mission_start_end():1145 [1] navigation: 2003-08-04T17:11:03.493308288 to 2003-08-04T22:05:45.711993344 (0 days 00:00:00.029997952 before mission_end) INFO 2025-06-26 05:34:07,705 resample.py get_mission_start_end():1145 [1] ctd1 : 2003-08-04T17:11:01.993411072 to 2003-08-04T22:05:45.721992576 (0 days 00:00:00.019998720 before mission_end) INFO 2025-06-26 05:34:07,706 resample.py get_mission_start_end():1145 [1] ctd2 : 2003-08-04T17:11:02.053406976 to 2003-08-04T22:05:45.741991296 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:34:07,708 resample.py get_mission_start_end():1145 [1] isus : 2003-08-04T17:11:58.139564800 to 2003-08-04T22:05:45.532005632 (0 days 00:00:00.209985664 before mission_end) INFO 2025-06-26 05:34:07,708 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.216.03/dorado_2003.216.03_align.nc mission netCDF file INFO 2025-06-26 05:34:07,709 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:07,906 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:07,940 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:07,973 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:08,007 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:08,036 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:08,063 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:08,091 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:08,117 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:08,143 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:08,170 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:08,197 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:08,225 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:08,253 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:08,282 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:08,310 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:08,339 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:08,366 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:08,394 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:08,422 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:08,435 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:08,448 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:08,460 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:08,637 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.216.03/dorado_2003.216.03_1S.nc INFO 2025-06-26 05:34:09,782 create_products.py gulper_odv():401 [1] No gulper times found for 2003.216.03 INFO 2025-06-26 05:34:09,782 process.py archive():337 [1] Archiving steps for 2003.216.03 INFO 2025-06-26 05:34:09,782 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.216.03/dorado_2003.216.03, BASE_PATH = /data/auv_data INFO 2025-06-26 05:34:09,783 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.216.03/dorado_2003.216.03 files to /Volumes/AUVCTD/surveys/2003/netcdf INFO 2025-06-26 05:34:09,784 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.216.03_1S.nc INFO 2025-06-26 05:34:09,800 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.216.03/dorado_2003.216.03_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:34:09,801 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.216.03_cal.nc INFO 2025-06-26 05:34:09,862 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.216.03/dorado_2003.216.03_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:34:09,863 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.216.03_align.nc INFO 2025-06-26 05:34:09,921 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.216.03/dorado_2003.216.03_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:34:09,946 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.216.03/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003216/2003.216.03 done. INFO 2025-06-26 05:34:09,966 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.216.03/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003216/2003.216.03 done. INFO 2025-06-26 05:34:09,971 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.216.03/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003216/2003.216.03 done. INFO 2025-06-26 05:34:09,987 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.216.03/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003216/2003.216.03 done. INFO 2025-06-26 05:34:10,037 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.216.03/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003216/2003.216.03 done. INFO 2025-06-26 05:34:10,043 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.216.03/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003216/2003.216.03 done. INFO 2025-06-26 05:34:10,060 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.216.03/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003216/2003.216.03 done. INFO 2025-06-26 05:34:10,060 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:34:10,061 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.216.03/dorado_2003.216.03_processing.log /Volumes/AUVCTD/surveys/2003/netcdf