INFO 2025-06-26 05:33:35,184 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:33:35,184 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled files exist in archive, but not processed by reprocess_surveys.m - ctdToUse = ctd1 INFO 2025-06-26 05:33:35,184 process.py process_mission():449 [1] Processing AUVCTD mission 2003.206.04 by user docker_user on host 671049448ece INFO 2025-06-26 05:33:35,184 process.py download_process():165 [1] Download and processing steps for 2003.206.04 INFO 2025-06-26 05:33:35,184 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003206/2003.206.04 INFO 2025-06-26 05:33:35,184 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003206/2003.206.04 to /data/auv_data/dorado/missionlogs/2003.206.04 INFO 2025-06-26 05:33:39,734 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.206.04 INFO 2025-06-26 05:33:39,734 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.206.04/ctdDriver.log (3265459 bytes) INFO 2025-06-26 05:33:39,967 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.206.04/ctdDriver2.log (3265453 bytes) INFO 2025-06-26 05:33:40,213 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.206.04/gps.log (23786 bytes) INFO 2025-06-26 05:33:40,223 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.206.04/hydroscatlog.log (2229794 bytes) INFO 2025-06-26 05:33:40,487 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.206.04/navigation.log (9090250 bytes) INFO 2025-06-26 05:33:41,125 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.206.04/isuslog.log (174197 bytes) INFO 2025-06-26 05:33:41,146 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.206.04/parosci.log (2231126 bytes) INFO 2025-06-26 05:33:41,332 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.206.04/tailCone.log (2230891 bytes) WARNING 2025-06-26 05:33:41,332 logs2netcdfs.py download_process_logs():795 [1] Failed to parse long_name & units from header in file /data/auv_data/dorado/missionlogs/2003.206.04/tailCone.log INFO 2025-06-26 05:33:41,333 logs2netcdfs.py download_process_logs():807 [1] Time to process: 1.60 seconds WARNING 2025-06-26 05:33:41,333 process.py download_process():196 [1] No lopc.bin file for 2003.206.04 INFO 2025-06-26 05:33:41,333 process.py calibrate():227 [1] Calibration steps for 2003.206.04 INFO 2025-06-26 05:33:41,420 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.206.04 INFO 2025-06-26 05:33:41,433 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:33:41,435 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:33:42,763 calibrate.py _nudge_pos():1806 [1] 161: 0.110 -0.0000104 -0.0000261 15 0.05 -33.121 -103.555 2003-07-25T19:28:30.167552000 INFO 2025-06-26 05:33:42,772 calibrate.py _nudge_pos():1806 [1] 162: 0.110 -0.0000159 -0.0000337 15 0.05 -50.563 -133.803 2003-07-25T19:28:33.167346432 INFO 2025-06-26 05:33:42,782 calibrate.py _nudge_pos():1806 [1] 163: 0.100 -0.0000226 -0.0000260 15 0.05 -71.519 -102.792 2003-07-25T19:28:36.177140352 INFO 2025-06-26 05:33:42,909 calibrate.py _nudge_pos():1806 [1] 177: 0.050 0.0014539 -0.0035535 11396 37.98 5.683 -17.335 2003-07-25T20:06:48.370114304 INFO 2025-06-26 05:33:43,536 calibrate.py _nudge_pos():1806 [1] 245: 0.200 0.0011260 -0.0026466 11395 37.98 4.402 -12.913 2003-07-25T20:45:54.369402368 INFO 2025-06-26 05:33:44,047 calibrate.py _nudge_pos():1806 [1] 299: 0.150 0.0024466 -0.0027114 11345 37.81 9.605 -13.287 2003-07-25T21:24:36.570320768 INFO 2025-06-26 05:33:44,499 calibrate.py _nudge_pos():1806 [1] 348: 0.140 0.0000773 -0.0000894 25 0.08 143.454 -207.107 2003-07-25T21:25:29.576689664 INFO 2025-06-26 05:33:44,663 calibrate.py _nudge_pos():1806 [1] 366: 0.080 0.0030464 -0.0013403 10391 34.63 13.056 -7.171 2003-07-25T22:00:24.773158784 INFO 2025-06-26 05:33:44,702 calibrate.py _nudge_pos():1806 [1] 370: 0.080 0.0000021 0.0000033 15 0.05 6.796 13.059 2003-07-25T22:00:30.772747776 INFO 2025-06-26 05:33:44,832 calibrate.py _nudge_pos():1862 [1] 362: - - - 2 0.00 - - INFO 2025-06-26 05:33:44,832 calibrate.py _nudge_pos():1868 [1] Points in final series = 46347 WARNING 2025-06-26 05:33:44,872 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz WARNING 2025-06-26 05:33:44,906 calibrate.py _hs2_process():2289 [1] Cannot process HS2 data: [Errno 2] No such file or directory: '/data/auv_data/dorado/missionlogs/2003.206.04/hs2Calibration.dat' INFO 2025-06-26 05:33:45,258 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:33:45,529 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:33:45,531 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.206.04/ctd1.nc INFO 2025-06-26 05:33:45,532 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:33:45,532 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:33:45,532 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:33:45,868 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:33:46,143 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:33:46,145 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.206.04/ctd2.nc INFO 2025-06-26 05:33:46,146 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd2_salinity values to NaN INFO 2025-06-26 05:33:46,147 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:33:46,147 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 05:33:46,157 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.206.04 ERROR 2025-06-26 05:33:46,157 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.206.04 ERROR 2025-06-26 05:33:46,158 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.206.04 ERROR 2025-06-26 05:33:46,158 calibrate.py process_logs():3542 [1] Error processing tailcone: tailcone has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.206.04 INFO 2025-06-26 05:33:46,159 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.206.04/dorado_2003.206.04_cal.nc INFO 2025-06-26 05:33:46,208 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, time INFO 2025-06-26 05:33:46,211 process.py align():251 [1] Alignment steps for 2003.206.04 INFO 2025-06-26 05:33:46,231 align.py process_cal():139 [1] Processing dorado_2003.206.04_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.206.04 INFO 2025-06-26 05:33:46,247 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:33:46,249 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:33:46,289 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:33:46,292 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:33:46,332 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:33:46,335 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:33:46,358 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:33:46,359 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:33:46,374 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:33:46,377 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:33:46,413 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:46,416 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:46,449 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:46,452 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:46,485 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:46,487 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:46,519 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:46,522 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:46,554 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:46,557 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:46,590 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:46,593 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:46,625 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:46,628 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:46,661 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:46,665 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:46,698 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:46,701 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:46,734 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:46,736 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:46,770 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.206.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:46,773 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:46,806 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.206.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:46,809 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:46,842 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.206.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:46,845 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:46,877 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.206.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:46,880 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:46,914 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.206.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:46,916 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:46,949 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.206.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:46,952 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:46,985 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.206.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:46,988 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:47,028 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.59 INFO 2025-06-26 05:33:47,054 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.59 INFO 2025-06-26 05:33:47,080 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.59 INFO 2025-06-26 05:33:47,092 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.206.04/dorado_2003.206.04_align.nc INFO 2025-06-26 05:33:47,131 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw INFO 2025-06-26 05:33:47,133 process.py resample():273 [1] Resampling steps for 2003.206.04 INFO 2025-06-26 05:33:47,134 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:33:47,150 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.206.04/dorado_2003.206.04_align.nc mission netCDF file INFO 2025-06-26 05:33:47,154 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.206.04/dorado_2003.206.04_align.nc mission netCDF file INFO 2025-06-26 05:33:47,155 resample.py get_mission_start_end():1145 [1] navigation: 2003-07-25T19:26:09.777169408 to 2003-07-25T22:00:44.171829760 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:33:47,156 resample.py get_mission_start_end():1145 [1] ctd1 : 2003-07-25T19:26:08.457259904 to 2003-07-25T22:00:44.161830528 (0 days 00:00:00.009999232 before mission_end) INFO 2025-06-26 05:33:47,158 resample.py get_mission_start_end():1145 [1] ctd2 : 2003-07-25T19:26:08.437261184 to 2003-07-25T22:00:44.161830528 (0 days 00:00:00.009999232 before mission_end) INFO 2025-06-26 05:33:47,159 resample.py get_mission_start_end():1145 [1] isus : 2003-07-25T19:27:04.843397120 to 2003-07-25T22:00:43.101903232 (0 days 00:00:01.069926528 before mission_end) INFO 2025-06-26 05:33:47,160 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.206.04/dorado_2003.206.04_align.nc mission netCDF file INFO 2025-06-26 05:33:47,160 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:47,279 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:47,301 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:47,324 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:47,345 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:47,364 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:47,382 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:47,400 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:47,417 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:47,434 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:47,451 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:47,469 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:47,486 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:47,504 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:47,523 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:47,541 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:47,559 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:47,577 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:47,595 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:47,613 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:47,624 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:47,635 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:47,645 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:47,775 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.206.04/dorado_2003.206.04_1S.nc INFO 2025-06-26 05:33:48,705 create_products.py gulper_odv():401 [1] No gulper times found for 2003.206.04 INFO 2025-06-26 05:33:48,706 process.py archive():337 [1] Archiving steps for 2003.206.04 INFO 2025-06-26 05:33:48,706 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.206.04/dorado_2003.206.04, BASE_PATH = /data/auv_data INFO 2025-06-26 05:33:48,706 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.206.04/dorado_2003.206.04 files to /Volumes/AUVCTD/surveys/2003/netcdf INFO 2025-06-26 05:33:48,707 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.206.04_1S.nc INFO 2025-06-26 05:33:48,720 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.04/dorado_2003.206.04_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:33:48,721 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.206.04_cal.nc INFO 2025-06-26 05:33:48,757 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.04/dorado_2003.206.04_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:33:48,758 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.206.04_align.nc INFO 2025-06-26 05:33:48,790 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.04/dorado_2003.206.04_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:33:48,806 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.04/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003206/2003.206.04 done. INFO 2025-06-26 05:33:48,821 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.04/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003206/2003.206.04 done. INFO 2025-06-26 05:33:48,825 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.04/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003206/2003.206.04 done. INFO 2025-06-26 05:33:48,837 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.04/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003206/2003.206.04 done. INFO 2025-06-26 05:33:48,865 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.04/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003206/2003.206.04 done. INFO 2025-06-26 05:33:48,870 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.04/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003206/2003.206.04 done. INFO 2025-06-26 05:33:48,880 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.04/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003206/2003.206.04 done. INFO 2025-06-26 05:33:48,881 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:33:48,881 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.04/dorado_2003.206.04_processing.log /Volumes/AUVCTD/surveys/2003/netcdf