INFO 2025-06-26 05:33:26,361 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber
INFO 2025-06-26 05:33:26,362 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled files exist in archive, but not processed by reprocess_surveys.m - ctdToUse = ctd1 
INFO 2025-06-26 05:33:26,362 process.py process_mission():449 [1] Processing AUVCTD mission 2003.206.03 by user docker_user on host 671049448ece
INFO 2025-06-26 05:33:26,362 process.py download_process():165 [1] Download and processing steps for 2003.206.03
INFO 2025-06-26 05:33:26,362 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003206/2003.206.03
INFO 2025-06-26 05:33:26,362 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003206/2003.206.03 to /data/auv_data/dorado/missionlogs/2003.206.03
INFO 2025-06-26 05:33:29,056 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.206.03
INFO 2025-06-26 05:33:29,057 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.206.03/ctdDriver.log (1696683 bytes)
INFO 2025-06-26 05:33:29,184 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.206.03/ctdDriver2.log (1696677 bytes)
INFO 2025-06-26 05:33:29,311 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.206.03/gps.log (17666 bytes)
INFO 2025-06-26 05:33:29,319 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.206.03/hydroscatlog.log (1160774 bytes)
INFO 2025-06-26 05:33:29,464 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.206.03/navigation.log (4721998 bytes)
INFO 2025-06-26 05:33:29,795 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.206.03/isuslog.log (90293 bytes)
INFO 2025-06-26 05:33:29,809 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.206.03/parosci.log (1161446 bytes)
INFO 2025-06-26 05:33:29,908 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.206.03/tailCone.log (1161211 bytes)
WARNING 2025-06-26 05:33:29,909 logs2netcdfs.py download_process_logs():795 [1] Failed to parse long_name & units from header in file /data/auv_data/dorado/missionlogs/2003.206.03/tailCone.log
INFO 2025-06-26 05:33:29,909 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.85 seconds
WARNING 2025-06-26 05:33:29,909 process.py download_process():196 [1] No lopc.bin file for 2003.206.03
INFO 2025-06-26 05:33:29,909 process.py calibrate():227 [1] Calibration steps for 2003.206.03
INFO 2025-06-26 05:33:29,974 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.206.03
INFO 2025-06-26 05:33:29,983 calibrate.py _nudge_pos():1680 [1] seg#   end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2025-06-26 05:33:29,985 calibrate.py _nudge_pos():1711 [1]                   -            -            -         0      0.00              -              -                             -
INFO 2025-06-26 05:33:31,443 calibrate.py _nudge_pos():1806 [1]   174:        0.110    0.0049666   -0.0037620     11391     37.97         19.426        -18.361 2003-07-25T18:41:59.988692352
INFO 2025-06-26 05:33:31,871 calibrate.py _nudge_pos():1806 [1]   220:        0.110   -0.0000135    0.0000055        30      0.10        -20.780         10.492 2003-07-25T18:42:50.985198848
INFO 2025-06-26 05:33:32,057 calibrate.py _nudge_pos():1806 [1]   240:        0.060    0.0041390   -0.0037247     11381     37.93         16.202        -18.195 2003-07-25T19:21:06.187966720
INFO 2025-06-26 05:33:32,454 calibrate.py _nudge_pos():1862 [1]  260:            -            -            -         4      0.01              -              -
INFO 2025-06-26 05:33:32,454 calibrate.py _nudge_pos():1868 [1] Points in final series = 24086
WARNING 2025-06-26 05:33:32,477 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz
WARNING 2025-06-26 05:33:32,497 calibrate.py _hs2_process():2289 [1] Cannot process HS2 data: [Errno 2] No such file or directory: '/data/auv_data/dorado/missionlogs/2003.206.03/hs2Calibration.dat'
INFO 2025-06-26 05:33:32,685 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds
INFO 2025-06-26 05:33:32,826 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds
INFO 2025-06-26 05:33:32,828 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.206.03/ctd1.nc
INFO 2025-06-26 05:33:32,829 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN
INFO 2025-06-26 05:33:32,829 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))]
INFO 2025-06-26 05:33:32,829 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1
INFO 2025-06-26 05:33:33,004 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds
INFO 2025-06-26 05:33:33,146 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds
INFO 2025-06-26 05:33:33,148 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.206.03/ctd2.nc
INFO 2025-06-26 05:33:33,149 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN
INFO 2025-06-26 05:33:33,150 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))]
INFO 2025-06-26 05:33:33,150 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2
ERROR 2025-06-26 05:33:33,158 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.206.03
ERROR 2025-06-26 05:33:33,159 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.206.03
ERROR 2025-06-26 05:33:33,159 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.206.03
ERROR 2025-06-26 05:33:33,159 calibrate.py process_logs():3542 [1] Error processing tailcone: tailcone has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.206.03
INFO 2025-06-26 05:33:33,160 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.206.03/dorado_2003.206.03_cal.nc
INFO 2025-06-26 05:33:33,201 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, time
INFO 2025-06-26 05:33:33,204 process.py align():251 [1] Alignment steps for 2003.206.03
INFO 2025-06-26 05:33:33,223 align.py process_cal():139 [1] Processing dorado_2003.206.03_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.206.03
INFO 2025-06-26 05:33:33,234 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-06-26 05:33:33,236 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00
INFO 2025-06-26 05:33:33,262 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-06-26 05:33:33,264 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00
INFO 2025-06-26 05:33:33,288 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-06-26 05:33:33,290 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00
INFO 2025-06-26 05:33:33,304 align.py process_cal():161 [1] Skipping navigation_posx
INFO 2025-06-26 05:33:33,304 align.py process_cal():161 [1] Skipping navigation_posy
INFO 2025-06-26 05:33:33,313 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-06-26 05:33:33,315 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00
INFO 2025-06-26 05:33:33,338 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:33:33,340 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:33:33,362 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:33:33,364 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:33:33,386 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:33:33,388 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:33:33,410 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:33:33,412 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:33:33,434 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:33:33,436 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:33:33,458 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:33:33,461 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:33:33,482 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:33:33,485 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:33:33,506 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:33:33,509 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:33:33,531 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:33:33,533 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:33:33,554 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:33:33,556 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:33:33,578 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.206.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:33:33,580 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:33:33,602 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.206.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:33:33,604 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:33:33,626 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.206.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:33:33,628 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:33:33,649 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.206.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:33:33,652 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:33:33,674 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.206.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:33:33,676 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:33:33,698 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.206.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:33:33,700 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:33:33,721 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.206.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:33:33,723 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:33:33,748 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.59
INFO 2025-06-26 05:33:33,767 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.59
INFO 2025-06-26 05:33:33,786 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.59
INFO 2025-06-26 05:33:33,796 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.206.03/dorado_2003.206.03_align.nc
INFO 2025-06-26 05:33:33,828 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw
INFO 2025-06-26 05:33:33,830 process.py resample():273 [1] Resampling steps for 2003.206.03
INFO 2025-06-26 05:33:33,831 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m
INFO 2025-06-26 05:33:33,846 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.206.03/dorado_2003.206.03_align.nc mission netCDF file
INFO 2025-06-26 05:33:33,849 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.206.03/dorado_2003.206.03_align.nc mission netCDF file
INFO 2025-06-26 05:33:33,850 resample.py get_mission_start_end():1145 [1] navigation: 2003-07-25T18:01:30.995089920 to 2003-07-25T19:21:47.995102720 (0 days 00:00:00 before mission_end)
INFO 2025-06-26 05:33:33,851 resample.py get_mission_start_end():1145 [1] ctd1      : 2003-07-25T18:01:29.495192576 to 2003-07-25T19:21:47.935106816 (0 days 00:00:00.059995904 before mission_end)
INFO 2025-06-26 05:33:33,852 resample.py get_mission_start_end():1145 [1] ctd2      : 2003-07-25T18:01:29.685179648 to 2003-07-25T19:21:47.875111040 (0 days 00:00:00.119991680 before mission_end)
INFO 2025-06-26 05:33:33,854 resample.py get_mission_start_end():1145 [1] isus      : 2003-07-25T18:02:26.461290112 to 2003-07-25T19:21:47.615128704 (0 days 00:00:00.379974016 before mission_end)
INFO 2025-06-26 05:33:33,854 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.206.03/dorado_2003.206.03_align.nc mission netCDF file
INFO 2025-06-26 05:33:33,855 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter 
INFO 2025-06-26 05:33:33,931 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter
INFO 2025-06-26 05:33:33,947 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter
INFO 2025-06-26 05:33:33,963 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter
INFO 2025-06-26 05:33:33,978 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter
INFO 2025-06-26 05:33:33,992 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter
INFO 2025-06-26 05:33:34,005 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter
INFO 2025-06-26 05:33:34,018 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter
INFO 2025-06-26 05:33:34,030 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter
INFO 2025-06-26 05:33:34,043 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter
INFO 2025-06-26 05:33:34,056 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter
INFO 2025-06-26 05:33:34,070 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter
INFO 2025-06-26 05:33:34,083 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter
INFO 2025-06-26 05:33:34,097 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter
INFO 2025-06-26 05:33:34,111 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter
INFO 2025-06-26 05:33:34,125 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter
INFO 2025-06-26 05:33:34,139 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter
INFO 2025-06-26 05:33:34,153 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter
INFO 2025-06-26 05:33:34,167 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter
INFO 2025-06-26 05:33:34,181 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter
INFO 2025-06-26 05:33:34,192 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter
INFO 2025-06-26 05:33:34,202 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter
INFO 2025-06-26 05:33:34,211 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter
INFO 2025-06-26 05:33:34,318 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.206.03/dorado_2003.206.03_1S.nc
INFO 2025-06-26 05:33:35,034 create_products.py gulper_odv():401 [1] No gulper times found for 2003.206.03
INFO 2025-06-26 05:33:35,034 process.py archive():337 [1] Archiving steps for 2003.206.03
INFO 2025-06-26 05:33:35,034 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.206.03/dorado_2003.206.03, BASE_PATH = /data/auv_data
INFO 2025-06-26 05:33:35,035 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.206.03/dorado_2003.206.03 files to /Volumes/AUVCTD/surveys/2003/netcdf
INFO 2025-06-26 05:33:35,036 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.206.03_1S.nc
INFO 2025-06-26 05:33:35,047 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.03/dorado_2003.206.03_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done.
INFO 2025-06-26 05:33:35,047 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.206.03_cal.nc
INFO 2025-06-26 05:33:35,071 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.03/dorado_2003.206.03_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done.
INFO 2025-06-26 05:33:35,072 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.206.03_align.nc
INFO 2025-06-26 05:33:35,093 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.03/dorado_2003.206.03_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done.
INFO 2025-06-26 05:33:35,107 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.03/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003206/2003.206.03 done.
INFO 2025-06-26 05:33:35,118 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.03/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003206/2003.206.03 done.
INFO 2025-06-26 05:33:35,124 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.03/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003206/2003.206.03 done.
INFO 2025-06-26 05:33:35,133 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.03/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003206/2003.206.03 done.
INFO 2025-06-26 05:33:35,154 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.03/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003206/2003.206.03 done.
INFO 2025-06-26 05:33:35,158 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.03/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003206/2003.206.03 done.
INFO 2025-06-26 05:33:35,167 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.03/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003206/2003.206.03 done.
INFO 2025-06-26 05:33:35,167 archive.py copy_to_AUVTCD():116 [1] Archiving product files
INFO 2025-06-26 05:33:35,167 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.03/dorado_2003.206.03_processing.log /Volumes/AUVCTD/surveys/2003/netcdf