INFO 2025-06-26 05:33:19,159 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:33:19,159 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled files exist in archive, but not processed by reprocess_surveys.m - ctdToUse = ctd1 INFO 2025-06-26 05:33:19,159 process.py process_mission():449 [1] Processing AUVCTD mission 2003.206.02 by user docker_user on host 671049448ece INFO 2025-06-26 05:33:19,159 process.py download_process():165 [1] Download and processing steps for 2003.206.02 INFO 2025-06-26 05:33:19,159 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003206/2003.206.02 INFO 2025-06-26 05:33:19,160 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003206/2003.206.02 to /data/auv_data/dorado/missionlogs/2003.206.02 INFO 2025-06-26 05:33:21,600 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.206.02 INFO 2025-06-26 05:33:21,600 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.206.02/ctdDriver.log (874235 bytes) INFO 2025-06-26 05:33:21,670 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.206.02/ctdDriver2.log (874229 bytes) INFO 2025-06-26 05:33:21,737 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.206.02/gps.log (13826 bytes) INFO 2025-06-26 05:33:21,745 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.206.02/hydroscatlog.log (600194 bytes) INFO 2025-06-26 05:33:21,819 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.206.02/navigation.log (2431738 bytes) INFO 2025-06-26 05:33:21,999 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.206.02/isuslog.log (46133 bytes) INFO 2025-06-26 05:33:22,008 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.206.02/parosci.log (600614 bytes) INFO 2025-06-26 05:33:22,080 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.206.02/tailCone.log (600667 bytes) WARNING 2025-06-26 05:33:22,080 logs2netcdfs.py download_process_logs():795 [1] Failed to parse long_name & units from header in file /data/auv_data/dorado/missionlogs/2003.206.02/tailCone.log INFO 2025-06-26 05:33:22,081 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.48 seconds WARNING 2025-06-26 05:33:22,081 process.py download_process():196 [1] No lopc.bin file for 2003.206.02 INFO 2025-06-26 05:33:22,081 process.py calibrate():227 [1] Calibration steps for 2003.206.02 INFO 2025-06-26 05:33:22,206 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.206.02 INFO 2025-06-26 05:33:22,214 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:33:22,215 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:33:23,547 calibrate.py _nudge_pos():1806 [1] 161: 0.040 -0.0000040 -0.0000034 30 0.10 -6.116 -6.465 2003-07-25T17:17:06.727604608 INFO 2025-06-26 05:33:23,593 calibrate.py _nudge_pos():1806 [1] 166: 0.030 -0.0000034 -0.0000054 15 0.05 -10.805 -21.471 2003-07-25T17:17:13.737124480 INFO 2025-06-26 05:33:23,708 calibrate.py _nudge_pos():1806 [1] 178: 0.190 0.0047249 -0.0024806 11395 37.98 18.476 -12.102 2003-07-25T17:55:23.730249216 INFO 2025-06-26 05:33:24,073 calibrate.py _nudge_pos():1862 [1] 196: - - - 1 0.00 - - INFO 2025-06-26 05:33:24,073 calibrate.py _nudge_pos():1868 [1] Points in final series = 12396 WARNING 2025-06-26 05:33:24,086 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:33:24,192 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:33:24,303 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:33:24,378 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:33:24,380 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.206.02/ctd1.nc INFO 2025-06-26 05:33:24,381 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:33:24,381 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:33:24,381 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:33:24,481 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:33:24,556 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:33:24,557 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.206.02/ctd2.nc INFO 2025-06-26 05:33:24,558 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:33:24,559 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:33:24,559 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 05:33:24,566 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.206.02 ERROR 2025-06-26 05:33:24,566 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.206.02 ERROR 2025-06-26 05:33:24,566 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.206.02 ERROR 2025-06-26 05:33:24,566 calibrate.py process_logs():3542 [1] Error processing tailcone: tailcone has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.206.02 INFO 2025-06-26 05:33:24,567 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.206.02/dorado_2003.206.02_cal.nc INFO 2025-06-26 05:33:24,605 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, time INFO 2025-06-26 05:33:24,608 process.py align():251 [1] Alignment steps for 2003.206.02 INFO 2025-06-26 05:33:24,628 align.py process_cal():139 [1] Processing dorado_2003.206.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.206.02 INFO 2025-06-26 05:33:24,635 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:33:24,637 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:33:24,653 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:33:24,655 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:33:24,670 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:33:24,672 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:33:24,681 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:33:24,681 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:33:24,687 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:33:24,689 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:33:24,704 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.206.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:33:24,706 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:24,721 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.206.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:33:24,723 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:24,738 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.206.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:33:24,740 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:24,755 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:24,756 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:24,771 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:24,773 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:24,788 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:24,790 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:24,804 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:24,806 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:24,822 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:24,824 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:24,839 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:24,842 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:24,857 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:24,859 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:24,874 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:24,876 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:24,891 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:24,893 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:24,908 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.206.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:24,910 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:24,925 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.206.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:24,927 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:24,943 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.206.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:24,945 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:24,961 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.206.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:24,963 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:24,979 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.206.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:24,981 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:24,997 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.206.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:24,999 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:25,016 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.206.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:25,018 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:25,034 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.206.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:33:25,036 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:33:25,054 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.59 INFO 2025-06-26 05:33:25,070 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.59 INFO 2025-06-26 05:33:25,087 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.59 INFO 2025-06-26 05:33:25,097 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.206.02/dorado_2003.206.02_align.nc INFO 2025-06-26 05:33:25,133 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw INFO 2025-06-26 05:33:25,135 process.py resample():273 [1] Resampling steps for 2003.206.02 INFO 2025-06-26 05:33:25,135 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:33:25,153 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.206.02/dorado_2003.206.02_align.nc mission netCDF file INFO 2025-06-26 05:33:25,156 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.206.02/dorado_2003.206.02_align.nc mission netCDF file INFO 2025-06-26 05:33:25,157 resample.py get_mission_start_end():1145 [1] navigation: 2003-07-25T17:14:42.937454976 to 2003-07-25T17:56:02.927564032 (0 days 00:00:00.169988224 before mission_end) INFO 2025-06-26 05:33:25,158 resample.py get_mission_start_end():1145 [1] hs2 : 2003-07-25T17:14:25.078678400 to 2003-07-25T17:56:03.047555840 (0 days 00:00:00.049996416 before mission_end) INFO 2025-06-26 05:33:25,160 resample.py get_mission_start_end():1145 [1] ctd1 : 2003-07-25T17:14:41.277568640 to 2003-07-25T17:56:02.867568128 (0 days 00:00:00.229984128 before mission_end) INFO 2025-06-26 05:33:25,161 resample.py get_mission_start_end():1145 [1] ctd2 : 2003-07-25T17:14:41.307566592 to 2003-07-25T17:56:02.897566080 (0 days 00:00:00.199986176 before mission_end) INFO 2025-06-26 05:33:25,162 resample.py get_mission_start_end():1145 [1] isus : 2003-07-25T17:15:37.353727232 to 2003-07-25T17:56:03.097552256 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:33:25,163 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.206.02/dorado_2003.206.02_align.nc mission netCDF file INFO 2025-06-26 05:33:25,163 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:25,215 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:25,228 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:25,239 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:25,250 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:25,262 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:25,272 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:25,283 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:25,294 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:25,304 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:25,314 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:25,323 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:25,333 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:25,342 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:25,351 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:25,361 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:25,370 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:25,381 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:25,391 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:25,402 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:25,412 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:25,423 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:25,433 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:25,442 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:25,451 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:25,459 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:33:25,562 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.206.02/dorado_2003.206.02_1S.nc INFO 2025-06-26 05:33:26,254 create_products.py gulper_odv():401 [1] No gulper times found for 2003.206.02 INFO 2025-06-26 05:33:26,254 process.py archive():337 [1] Archiving steps for 2003.206.02 INFO 2025-06-26 05:33:26,254 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.206.02/dorado_2003.206.02, BASE_PATH = /data/auv_data INFO 2025-06-26 05:33:26,255 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.206.02/dorado_2003.206.02 files to /Volumes/AUVCTD/surveys/2003/netcdf INFO 2025-06-26 05:33:26,256 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.206.02_1S.nc INFO 2025-06-26 05:33:26,264 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.02/dorado_2003.206.02_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:33:26,265 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.206.02_cal.nc INFO 2025-06-26 05:33:26,281 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.02/dorado_2003.206.02_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:33:26,282 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.206.02_align.nc INFO 2025-06-26 05:33:26,297 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.02/dorado_2003.206.02_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:33:26,308 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003206/2003.206.02 done. INFO 2025-06-26 05:33:26,316 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003206/2003.206.02 done. INFO 2025-06-26 05:33:26,320 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003206/2003.206.02 done. INFO 2025-06-26 05:33:26,327 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003206/2003.206.02 done. INFO 2025-06-26 05:33:26,340 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003206/2003.206.02 done. INFO 2025-06-26 05:33:26,344 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003206/2003.206.02 done. INFO 2025-06-26 05:33:26,351 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003206/2003.206.02 done. INFO 2025-06-26 05:33:26,351 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:33:26,351 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.206.02/dorado_2003.206.02_processing.log /Volumes/AUVCTD/surveys/2003/netcdf