Execution of AUVprocess_main version 1.86 at 2018-06-02T01:27:47Z on elvis
Matlab command executed: 
   AUVprocess_main('AUVCTD', 2003, ['230.02';'230.03';'230.04';'230.05'], 'ssds.shore.mbari.org', 0, 'ssdsLoads-new-ssds.jar', 0, '/mbari/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/', [], 'ctd1')
 
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Processing data from SSDS via DODS server
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Processing AUV mission: 2003.230.02
Data path is http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.02/
Calibration path is http://ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.02/
Processing results path (data and metadata) is /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
Processing DVL navigation data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.02/navigation.nc')
Creating vector time with 37806 elements.
Creating vector mPos_x with 37806 elements.
Creating vector time with 37806 elements.
Creating vector mPos_y with 37806 elements.
Creating vector time with 37806 elements.
Creating vector mDepth with 37806 elements.
Creating vector time with 37806 elements.
Creating vector mGpsNorth with 37806 elements.
Creating vector time with 37806 elements.
Creating vector mGpsEast with 37806 elements.
Creating vector time with 37806 elements.
Creating vector mGpsValid with 37806 elements.
Creating vector time with 37806 elements.
Creating vector mPhi with 37806 elements.
Creating vector time with 37806 elements.
Creating vector mTheta with 37806 elements.
Creating vector time with 37806 elements.
Creating vector mPsi with 37806 elements.
Creating vector time with 37806 elements.
Creating vector mOmega_x with 37806 elements.
Creating vector time with 37806 elements.
Creating vector mOmega_y with 37806 elements.
Creating vector time with 37806 elements.
Creating vector mOmega_z with 37806 elements.
Creating vector time with 37806 elements.
Creating vector mPsaRange with 37806 elements.
Creating vector time with 37806 elements.
Creating vector mAltitude with 37806 elements.
Creating vector time with 37806 elements.
Creating vector mWaterSpeed with 37806 elements.
Creating vector time with 37806 elements.
Creating vector nfix with 37806 elements.
Creating vector time with 37806 elements.
Creating vector efix with 37806 elements.
Creating vector time with 37806 elements.
Creating vector filter_north with 37806 elements.
Creating vector time with 37806 elements.
Creating vector filter_east with 37806 elements.
Creating vector time with 37806 elements.
Creating vector filter_depth with 37806 elements.
Creating vector time with 37806 elements.
Creating vector north_current with 37806 elements.
Creating vector time with 37806 elements.
Creating vector east_current with 37806 elements.
Creating vector time with 37806 elements.
Creating vector speed_bias with 37806 elements.
Creating vector time with 37806 elements.
Creating vector heading_bias with 37806 elements.
Creating vector time with 37806 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.02/navigation.nc');
processNav(): median of positive valued depths = 122.306
processNav(): Finding depths less than 856.1423 and times > 0
processNav(): length(Nav.depth) = 37806
processNav(): length(gindx)     = 37806
 
Processing GPS navigation data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.02/gps.nc')
Creating vector time with 456 elements.
Creating vector UTCTime with 456 elements.
Creating vector time with 456 elements.
Creating vector latitude with 456 elements.
Creating vector time with 456 elements.
Creating vector longitude with 456 elements.
Creating vector time with 456 elements.
Creating vector quality with 456 elements.
Creating vector time with 456 elements.
Creating vector numberOfSatellites with 456 elements.
Creating vector time with 456 elements.
Creating vector hdop with 456 elements.
Creating vector time with 456 elements.
Creating vector antennaHeight with 456 elements.
Creating vector time with 456 elements.
Creating vector geoHeight with 456 elements.
Creating vector time with 456 elements.
Creating vector dgpsDataAge with 456 elements.
Creating vector time with 456 elements.
Creating vector dgpsRSID with 456 elements.
Creating vector time with 456 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.02/gps.nc');
 
Processing depth data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.02/parosci.nc')
Creating vector time with 37911 elements.
Creating vector depth with 37911 elements.
Creating vector time with 37911 elements.
Creating vector temp with 37911 elements.
Creating vector time with 37911 elements.
Creating vector pressure with 37911 elements.
Creating vector time with 37911 elements.
Creating vector temp_period with 37911 elements.
Creating vector time with 37911 elements.
Creating vector pres_period with 37911 elements.
Creating vector time with 37911 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.02/parosci.nc');
in processDepth.m
Before: min(Depth.data) = -0.49873 max(Depth.data) = 250.7219
Found 0 bad (> 300 | < -1.0) depth values in Depth.data.  Replacing with NaNs
After: min(Depth.data) = -0.49873 max(Depth.data) = 250.7219
 
Processing hs2 backscattering and chlorophyll fluorescence data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.02/hydroscatlog.nc')
Creating vector time with 30301 elements.
Creating vector Seconds with 30301 elements.
Creating vector time with 30301 elements.
Creating vector HundrethsOfSeconds with 30301 elements.
Creating vector time with 30301 elements.
Creating vector Snorm1 with 30301 elements.
Creating vector time with 30301 elements.
Creating vector Snorm2 with 30301 elements.
Creating vector time with 30301 elements.
Creating vector Snorm3 with 30301 elements.
Creating vector time with 30301 elements.
Creating vector Gain_Status_1 with 30301 elements.
Creating vector time with 30301 elements.
Creating vector Gain_Status_2 with 30301 elements.
Creating vector time with 30301 elements.
Creating vector Gain_Status_3 with 30301 elements.
Creating vector time with 30301 elements.
Creating vector RawDepthValue with 30301 elements.
Creating vector time with 30301 elements.
Creating vector RawTempValue with 30301 elements.
Creating vector time with 30301 elements.
Creating vector Temperature with 30301 elements.
Creating vector time with 30301 elements.
Creating vector ErrorValue with 30301 elements.
Creating vector time with 30301 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.02/hydroscatlog.nc');
 
Processing CTD #1 data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.02/ctdDriver.nc')
Creating vector time with 30250 elements.
Creating vector conductivity with 30250 elements.
Creating vector time with 30250 elements.
Creating vector temperature with 30250 elements.
Creating vector time with 30250 elements.
Creating vector cond_frequency with 30250 elements.
Creating vector time with 30250 elements.
Creating vector temp_frequency with 30250 elements.
Creating vector time with 30250 elements.
Creating vector spare with 30250 elements.
Creating vector time with 30250 elements.
Creating vector humidity with 30250 elements.
Creating vector time with 30250 elements.
Creating vector flow1 with 30250 elements.
Creating vector time with 30250 elements.
Creating vector OBS with 30250 elements.
Creating vector time with 30250 elements.
Creating vector dissolvedO2 with 30250 elements.
Creating vector time with 30250 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.02/ctdDriver.nc');
Obtaining calibration from http://ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.02/ctdDriver.cfg
Oxygen calibration loaded from CTD config file (current method)
Using constant flow rate offset for oxygen...
 
Processing CTD #2 data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.02/ctdDriver2.nc')
Creating vector time with 30249 elements.
Creating vector conductivity with 30249 elements.
Creating vector time with 30249 elements.
Creating vector temperature with 30249 elements.
Creating vector time with 30249 elements.
Creating vector cond_frequency with 30249 elements.
Creating vector time with 30249 elements.
Creating vector temp_frequency with 30249 elements.
Creating vector time with 30249 elements.
Creating vector flow2 with 30249 elements.
Creating vector time with 30249 elements.
Creating vector spare with 30249 elements.
Creating vector time with 30249 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.02/ctdDriver2.nc');
Obtaining calibration from http://ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.02/ctdDriver2.cfg
 
Processing ISUS data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.02/isuslog.nc')
Creating vector time with 4544 elements.
Creating vector isusNitrate with 4544 elements.
Creating vector time with 4544 elements.
Creating vector isusTemp with 4544 elements.
Creating vector time with 4544 elements.
Creating vector isusQuality with 4544 elements.
Creating vector time with 4544 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.02/isuslog.nc');
Total lag applied to nitrate = 6 seconds
 
Processing Biolume data...
[Warning: "/mbari/matlab/toolbox/matlab/demos" not found in path.] 
[> In rmpath (line 75)
  In processBiolume (line 21)
  In processAUVmission (line 220)
  In AUVprocess_main (line 225)] 
[Warning: "/mbari/matlabR2012a/toolbox/matlab/demos" not found in path.] 
[> In rmpath (line 75)
  In processBiolume (line 22)
  In processAUVmission (line 220)
  In AUVprocess_main (line 225)] 
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.02/biolume.nc')
Creating vector time with 7584 elements.
Creating vector rrr with 7584 elements.
Creating vector time with 7584 elements.
Creating vector cal_striing with 7584 elements.
Creating vector time with 7584 elements.
Creating vector pump with 7584 elements.
Creating vector time with 7584 elements.
Creating vector flow with 7584 elements.
Creating vector time with 7584 elements.
Creating vector humidity with 7584 elements.
Creating vector time with 7584 elements.
Creating vector temperature with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_0 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_1 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_2 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_3 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_4 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_5 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_6 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_7 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_8 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_9 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_10 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_11 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_12 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_13 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_14 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_15 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_16 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_17 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_18 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_19 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_20 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_21 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_22 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_23 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_24 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_25 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_26 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_27 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_28 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_29 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_30 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_31 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_32 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_33 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_34 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_35 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_36 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_37 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_38 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_39 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_40 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_41 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_42 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_43 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_44 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_45 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_46 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_47 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_48 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_49 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_50 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_51 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_52 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_53 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_54 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_55 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_56 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_57 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_58 with 7584 elements.
Creating vector time with 7584 elements.
Creating vector raw_59 with 7584 elements.
Creating vector time with 7584 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.02/biolume.nc');
 
Processing LOPC plankton data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.02/lopc.nc')
Error: Error while reading the URL: http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.02/lopc.nc.dods?.
The OPeNDAP server returned the following message:
Not Found: The data source or server could not be found.
        Often this means that the OPeNDAP server is missing or needs attention;
        Please contact the server administrator.


att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.02/lopc.nc');
Error: Error while reading the URL: http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.02/lopc.nc.das.
The OPeNDAP server returned the following message:
Not Found: The data source or server could not be found.
        Often this means that the OPeNDAP server is missing or needs attention;
        Please contact the server administrator.


*** Setting lopc structure to NaNs. *** 
 
save /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003.230.02.mat BL CTD1 CTD2 hs2 ISUS Nav gps lopc
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Processing AUV mission: 2003.230.03
Data path is http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.03/
Calibration path is http://ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.03/
Processing results path (data and metadata) is /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
Processing DVL navigation data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.03/navigation.nc')
Creating vector time with 6623 elements.
Creating vector mPos_x with 6623 elements.
Creating vector time with 6623 elements.
Creating vector mPos_y with 6623 elements.
Creating vector time with 6623 elements.
Creating vector mDepth with 6623 elements.
Creating vector time with 6623 elements.
Creating vector mGpsNorth with 6623 elements.
Creating vector time with 6623 elements.
Creating vector mGpsEast with 6623 elements.
Creating vector time with 6623 elements.
Creating vector mGpsValid with 6623 elements.
Creating vector time with 6623 elements.
Creating vector mPhi with 6623 elements.
Creating vector time with 6623 elements.
Creating vector mTheta with 6623 elements.
Creating vector time with 6623 elements.
Creating vector mPsi with 6623 elements.
Creating vector time with 6623 elements.
Creating vector mOmega_x with 6623 elements.
Creating vector time with 6623 elements.
Creating vector mOmega_y with 6623 elements.
Creating vector time with 6623 elements.
Creating vector mOmega_z with 6623 elements.
Creating vector time with 6623 elements.
Creating vector mPsaRange with 6623 elements.
Creating vector time with 6623 elements.
Creating vector mAltitude with 6623 elements.
Creating vector time with 6623 elements.
Creating vector mWaterSpeed with 6623 elements.
Creating vector time with 6623 elements.
Creating vector nfix with 6623 elements.
Creating vector time with 6623 elements.
Creating vector efix with 6623 elements.
Creating vector time with 6623 elements.
Creating vector filter_north with 6623 elements.
Creating vector time with 6623 elements.
Creating vector filter_east with 6623 elements.
Creating vector time with 6623 elements.
Creating vector filter_depth with 6623 elements.
Creating vector time with 6623 elements.
Creating vector north_current with 6623 elements.
Creating vector time with 6623 elements.
Creating vector east_current with 6623 elements.
Creating vector time with 6623 elements.
Creating vector speed_bias with 6623 elements.
Creating vector time with 6623 elements.
Creating vector heading_bias with 6623 elements.
Creating vector time with 6623 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.03/navigation.nc');
processNav(): median of positive valued depths = 126.8985
processNav(): Finding depths less than 888.2893 and times > 0
processNav(): length(Nav.depth) = 6623
processNav(): length(gindx)     = 6623
 
Processing GPS navigation data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.03/gps.nc')
Creating vector time with 197 elements.
Creating vector UTCTime with 197 elements.
Creating vector time with 197 elements.
Creating vector latitude with 197 elements.
Creating vector time with 197 elements.
Creating vector longitude with 197 elements.
Creating vector time with 197 elements.
Creating vector quality with 197 elements.
Creating vector time with 197 elements.
Creating vector numberOfSatellites with 197 elements.
Creating vector time with 197 elements.
Creating vector hdop with 197 elements.
Creating vector time with 197 elements.
Creating vector antennaHeight with 197 elements.
Creating vector time with 197 elements.
Creating vector geoHeight with 197 elements.
Creating vector time with 197 elements.
Creating vector dgpsDataAge with 197 elements.
Creating vector time with 197 elements.
Creating vector dgpsRSID with 197 elements.
Creating vector time with 197 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.03/gps.nc');
 
Processing depth data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.03/parosci.nc')
Creating vector time with 6728 elements.
Creating vector depth with 6728 elements.
Creating vector time with 6728 elements.
Creating vector temp with 6728 elements.
Creating vector time with 6728 elements.
Creating vector pressure with 6728 elements.
Creating vector time with 6728 elements.
Creating vector temp_period with 6728 elements.
Creating vector time with 6728 elements.
Creating vector pres_period with 6728 elements.
Creating vector time with 6728 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.03/parosci.nc');
in processDepth.m
Before: min(Depth.data) = -0.21268 max(Depth.data) = 250.5492
Found 0 bad (> 300 | < -1.0) depth values in Depth.data.  Replacing with NaNs
After: min(Depth.data) = -0.21268 max(Depth.data) = 250.5492
 
Processing hs2 backscattering and chlorophyll fluorescence data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.03/hydroscatlog.nc')
Creating vector time with 5366 elements.
Creating vector Seconds with 5366 elements.
Creating vector time with 5366 elements.
Creating vector HundrethsOfSeconds with 5366 elements.
Creating vector time with 5366 elements.
Creating vector Snorm1 with 5366 elements.
Creating vector time with 5366 elements.
Creating vector Snorm2 with 5366 elements.
Creating vector time with 5366 elements.
Creating vector Snorm3 with 5366 elements.
Creating vector time with 5366 elements.
Creating vector Gain_Status_1 with 5366 elements.
Creating vector time with 5366 elements.
Creating vector Gain_Status_2 with 5366 elements.
Creating vector time with 5366 elements.
Creating vector Gain_Status_3 with 5366 elements.
Creating vector time with 5366 elements.
Creating vector RawDepthValue with 5366 elements.
Creating vector time with 5366 elements.
Creating vector RawTempValue with 5366 elements.
Creating vector time with 5366 elements.
Creating vector Temperature with 5366 elements.
Creating vector time with 5366 elements.
Creating vector ErrorValue with 5366 elements.
Creating vector time with 5366 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.03/hydroscatlog.nc');
 
Processing CTD #1 data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.03/ctdDriver.nc')
Creating vector time with 5305 elements.
Creating vector conductivity with 5305 elements.
Creating vector time with 5305 elements.
Creating vector temperature with 5305 elements.
Creating vector time with 5305 elements.
Creating vector cond_frequency with 5305 elements.
Creating vector time with 5305 elements.
Creating vector temp_frequency with 5305 elements.
Creating vector time with 5305 elements.
Creating vector spare with 5305 elements.
Creating vector time with 5305 elements.
Creating vector humidity with 5305 elements.
Creating vector time with 5305 elements.
Creating vector flow1 with 5305 elements.
Creating vector time with 5305 elements.
Creating vector OBS with 5305 elements.
Creating vector time with 5305 elements.
Creating vector dissolvedO2 with 5305 elements.
Creating vector time with 5305 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.03/ctdDriver.nc');
Obtaining calibration from http://ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.03/ctdDriver.cfg
Oxygen calibration loaded from CTD config file (current method)
Using constant flow rate offset for oxygen...
 
Processing CTD #2 data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.03/ctdDriver2.nc')
Creating vector time with 5305 elements.
Creating vector conductivity with 5305 elements.
Creating vector time with 5305 elements.
Creating vector temperature with 5305 elements.
Creating vector time with 5305 elements.
Creating vector cond_frequency with 5305 elements.
Creating vector time with 5305 elements.
Creating vector temp_frequency with 5305 elements.
Creating vector time with 5305 elements.
Creating vector flow2 with 5305 elements.
Creating vector time with 5305 elements.
Creating vector spare with 5305 elements.
Creating vector time with 5305 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.03/ctdDriver2.nc');
Obtaining calibration from http://ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.03/ctdDriver2.cfg
 
Processing ISUS data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.03/isuslog.nc')
Creating vector time with 769 elements.
Creating vector isusNitrate with 769 elements.
Creating vector time with 769 elements.
Creating vector isusTemp with 769 elements.
Creating vector time with 769 elements.
Creating vector isusQuality with 769 elements.
Creating vector time with 769 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.03/isuslog.nc');
Total lag applied to nitrate = 6 seconds
 
Processing Biolume data...
[Warning: "/mbari/matlab/toolbox/matlab/demos" not found in path.] 
[> In rmpath (line 75)
  In processBiolume (line 21)
  In processAUVmission (line 220)
  In AUVprocess_main (line 225)] 
[Warning: "/mbari/matlabR2012a/toolbox/matlab/demos" not found in path.] 
[> In rmpath (line 75)
  In processBiolume (line 22)
  In processAUVmission (line 220)
  In AUVprocess_main (line 225)] 
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.03/biolume.nc')
Creating vector time with 1347 elements.
Creating vector rrr with 1347 elements.
Creating vector time with 1347 elements.
Creating vector cal_striing with 1347 elements.
Creating vector time with 1347 elements.
Creating vector pump with 1347 elements.
Creating vector time with 1347 elements.
Creating vector flow with 1347 elements.
Creating vector time with 1347 elements.
Creating vector humidity with 1347 elements.
Creating vector time with 1347 elements.
Creating vector temperature with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_0 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_1 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_2 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_3 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_4 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_5 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_6 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_7 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_8 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_9 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_10 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_11 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_12 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_13 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_14 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_15 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_16 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_17 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_18 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_19 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_20 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_21 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_22 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_23 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_24 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_25 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_26 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_27 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_28 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_29 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_30 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_31 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_32 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_33 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_34 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_35 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_36 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_37 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_38 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_39 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_40 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_41 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_42 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_43 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_44 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_45 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_46 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_47 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_48 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_49 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_50 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_51 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_52 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_53 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_54 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_55 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_56 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_57 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_58 with 1347 elements.
Creating vector time with 1347 elements.
Creating vector raw_59 with 1347 elements.
Creating vector time with 1347 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.03/biolume.nc');
 
Processing LOPC plankton data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.03/lopc.nc')
Error: Error while reading the URL: http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.03/lopc.nc.dods?.
The OPeNDAP server returned the following message:
Not Found: The data source or server could not be found.
        Often this means that the OPeNDAP server is missing or needs attention;
        Please contact the server administrator.


att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.03/lopc.nc');
Error: Error while reading the URL: http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.03/lopc.nc.das.
The OPeNDAP server returned the following message:
Not Found: The data source or server could not be found.
        Often this means that the OPeNDAP server is missing or needs attention;
        Please contact the server administrator.


*** Setting lopc structure to NaNs. *** 
 
save /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003.230.03.mat BL CTD1 CTD2 hs2 ISUS Nav gps lopc
*************************************************************************
 
 
*************************************************************************
Processing AUV mission: 2003.230.04
Data path is http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.04/
Calibration path is http://ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.04/
Processing results path (data and metadata) is /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
Processing DVL navigation data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.04/navigation.nc')
Creating vector time with 37133 elements.
Creating vector mPos_x with 37133 elements.
Creating vector time with 37133 elements.
Creating vector mPos_y with 37133 elements.
Creating vector time with 37133 elements.
Creating vector mDepth with 37133 elements.
Creating vector time with 37133 elements.
Creating vector mGpsNorth with 37133 elements.
Creating vector time with 37133 elements.
Creating vector mGpsEast with 37133 elements.
Creating vector time with 37133 elements.
Creating vector mGpsValid with 37133 elements.
Creating vector time with 37133 elements.
Creating vector mPhi with 37133 elements.
Creating vector time with 37133 elements.
Creating vector mTheta with 37133 elements.
Creating vector time with 37133 elements.
Creating vector mPsi with 37133 elements.
Creating vector time with 37133 elements.
Creating vector mOmega_x with 37133 elements.
Creating vector time with 37133 elements.
Creating vector mOmega_y with 37133 elements.
Creating vector time with 37133 elements.
Creating vector mOmega_z with 37133 elements.
Creating vector time with 37133 elements.
Creating vector mPsaRange with 37133 elements.
Creating vector time with 37133 elements.
Creating vector mAltitude with 37133 elements.
Creating vector time with 37133 elements.
Creating vector mWaterSpeed with 37133 elements.
Creating vector time with 37133 elements.
Creating vector nfix with 37133 elements.
Creating vector time with 37133 elements.
Creating vector efix with 37133 elements.
Creating vector time with 37133 elements.
Creating vector filter_north with 37133 elements.
Creating vector time with 37133 elements.
Creating vector filter_east with 37133 elements.
Creating vector time with 37133 elements.
Creating vector filter_depth with 37133 elements.
Creating vector time with 37133 elements.
Creating vector north_current with 37133 elements.
Creating vector time with 37133 elements.
Creating vector east_current with 37133 elements.
Creating vector time with 37133 elements.
Creating vector speed_bias with 37133 elements.
Creating vector time with 37133 elements.
Creating vector heading_bias with 37133 elements.
Creating vector time with 37133 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.04/navigation.nc');
processNav(): median of positive valued depths = 123.6488
processNav(): Finding depths less than 865.5413 and times > 0
processNav(): length(Nav.depth) = 37133
processNav(): length(gindx)     = 37133
 
Processing GPS navigation data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.04/gps.nc')
Creating vector time with 426 elements.
Creating vector UTCTime with 426 elements.
Creating vector time with 426 elements.
Creating vector latitude with 426 elements.
Creating vector time with 426 elements.
Creating vector longitude with 426 elements.
Creating vector time with 426 elements.
Creating vector quality with 426 elements.
Creating vector time with 426 elements.
Creating vector numberOfSatellites with 426 elements.
Creating vector time with 426 elements.
Creating vector hdop with 426 elements.
Creating vector time with 426 elements.
Creating vector antennaHeight with 426 elements.
Creating vector time with 426 elements.
Creating vector geoHeight with 426 elements.
Creating vector time with 426 elements.
Creating vector dgpsDataAge with 426 elements.
Creating vector time with 426 elements.
Creating vector dgpsRSID with 426 elements.
Creating vector time with 426 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.04/gps.nc');
 
Processing depth data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.04/parosci.nc')
Creating vector time with 37233 elements.
Creating vector depth with 37233 elements.
Creating vector time with 37233 elements.
Creating vector temp with 37233 elements.
Creating vector time with 37233 elements.
Creating vector pressure with 37233 elements.
Creating vector time with 37233 elements.
Creating vector temp_period with 37233 elements.
Creating vector time with 37233 elements.
Creating vector pres_period with 37233 elements.
Creating vector time with 37233 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.04/parosci.nc');
in processDepth.m
Before: min(Depth.data) = -0.23773 max(Depth.data) = 250.7085
Found 0 bad (> 300 | < -1.0) depth values in Depth.data.  Replacing with NaNs
After: min(Depth.data) = -0.23773 max(Depth.data) = 250.7085
 
Processing hs2 backscattering and chlorophyll fluorescence data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.04/hydroscatlog.nc')
Creating vector time with 29759 elements.
Creating vector Seconds with 29759 elements.
Creating vector time with 29759 elements.
Creating vector HundrethsOfSeconds with 29759 elements.
Creating vector time with 29759 elements.
Creating vector Snorm1 with 29759 elements.
Creating vector time with 29759 elements.
Creating vector Snorm2 with 29759 elements.
Creating vector time with 29759 elements.
Creating vector Snorm3 with 29759 elements.
Creating vector time with 29759 elements.
Creating vector Gain_Status_1 with 29759 elements.
Creating vector time with 29759 elements.
Creating vector Gain_Status_2 with 29759 elements.
Creating vector time with 29759 elements.
Creating vector Gain_Status_3 with 29759 elements.
Creating vector time with 29759 elements.
Creating vector RawDepthValue with 29759 elements.
Creating vector time with 29759 elements.
Creating vector RawTempValue with 29759 elements.
Creating vector time with 29759 elements.
Creating vector Temperature with 29759 elements.
Creating vector time with 29759 elements.
Creating vector ErrorValue with 29759 elements.
Creating vector time with 29759 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.04/hydroscatlog.nc');
 
Processing CTD #1 data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.04/ctdDriver.nc')
Creating vector time with 29708 elements.
Creating vector conductivity with 29708 elements.
Creating vector time with 29708 elements.
Creating vector temperature with 29708 elements.
Creating vector time with 29708 elements.
Creating vector cond_frequency with 29708 elements.
Creating vector time with 29708 elements.
Creating vector temp_frequency with 29708 elements.
Creating vector time with 29708 elements.
Creating vector spare with 29708 elements.
Creating vector time with 29708 elements.
Creating vector humidity with 29708 elements.
Creating vector time with 29708 elements.
Creating vector flow1 with 29708 elements.
Creating vector time with 29708 elements.
Creating vector OBS with 29708 elements.
Creating vector time with 29708 elements.
Creating vector dissolvedO2 with 29708 elements.
Creating vector time with 29708 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.04/ctdDriver.nc');
Obtaining calibration from http://ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.04/ctdDriver.cfg
Oxygen calibration loaded from CTD config file (current method)
Using constant flow rate offset for oxygen...
 
Processing CTD #2 data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.04/ctdDriver2.nc')
Creating vector time with 29708 elements.
Creating vector conductivity with 29708 elements.
Creating vector time with 29708 elements.
Creating vector temperature with 29708 elements.
Creating vector time with 29708 elements.
Creating vector cond_frequency with 29708 elements.
Creating vector time with 29708 elements.
Creating vector temp_frequency with 29708 elements.
Creating vector time with 29708 elements.
Creating vector flow2 with 29708 elements.
Creating vector time with 29708 elements.
Creating vector spare with 29708 elements.
Creating vector time with 29708 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.04/ctdDriver2.nc');
Obtaining calibration from http://ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.04/ctdDriver2.cfg
 
Processing ISUS data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.04/isuslog.nc')
Creating vector time with 4460 elements.
Creating vector isusNitrate with 4460 elements.
Creating vector time with 4460 elements.
Creating vector isusTemp with 4460 elements.
Creating vector time with 4460 elements.
Creating vector isusQuality with 4460 elements.
Creating vector time with 4460 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.04/isuslog.nc');
Total lag applied to nitrate = 6 seconds
 
Processing Biolume data...
[Warning: "/mbari/matlab/toolbox/matlab/demos" not found in path.] 
[> In rmpath (line 75)
  In processBiolume (line 21)
  In processAUVmission (line 220)
  In AUVprocess_main (line 225)] 
[Warning: "/mbari/matlabR2012a/toolbox/matlab/demos" not found in path.] 
[> In rmpath (line 75)
  In processBiolume (line 22)
  In processAUVmission (line 220)
  In AUVprocess_main (line 225)] 
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.04/biolume.nc')
Creating vector time with 7448 elements.
Creating vector rrr with 7448 elements.
Creating vector time with 7448 elements.
Creating vector cal_striing with 7448 elements.
Creating vector time with 7448 elements.
Creating vector pump with 7448 elements.
Creating vector time with 7448 elements.
Creating vector flow with 7448 elements.
Creating vector time with 7448 elements.
Creating vector humidity with 7448 elements.
Creating vector time with 7448 elements.
Creating vector temperature with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_0 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_1 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_2 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_3 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_4 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_5 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_6 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_7 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_8 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_9 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_10 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_11 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_12 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_13 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_14 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_15 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_16 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_17 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_18 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_19 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_20 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_21 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_22 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_23 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_24 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_25 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_26 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_27 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_28 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_29 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_30 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_31 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_32 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_33 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_34 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_35 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_36 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_37 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_38 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_39 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_40 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_41 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_42 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_43 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_44 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_45 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_46 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_47 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_48 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_49 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_50 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_51 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_52 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_53 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_54 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_55 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_56 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_57 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_58 with 7448 elements.
Creating vector time with 7448 elements.
Creating vector raw_59 with 7448 elements.
Creating vector time with 7448 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.04/biolume.nc');
 
Processing LOPC plankton data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.04/lopc.nc')
Error: Error while reading the URL: http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.04/lopc.nc.dods?.
The OPeNDAP server returned the following message:
Not Found: The data source or server could not be found.
        Often this means that the OPeNDAP server is missing or needs attention;
        Please contact the server administrator.


att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.04/lopc.nc');
Error: Error while reading the URL: http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.04/lopc.nc.das.
The OPeNDAP server returned the following message:
Not Found: The data source or server could not be found.
        Often this means that the OPeNDAP server is missing or needs attention;
        Please contact the server administrator.


*** Setting lopc structure to NaNs. *** 
 
save /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003.230.04.mat BL CTD1 CTD2 hs2 ISUS Nav gps lopc
*************************************************************************
 
 
*************************************************************************
Processing AUV mission: 2003.230.05
Data path is http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.05/
Calibration path is http://ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.05/
Processing results path (data and metadata) is /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
Processing DVL navigation data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.05/navigation.nc')
Creating vector time with 10092 elements.
Creating vector mPos_x with 10092 elements.
Creating vector time with 10092 elements.
Creating vector mPos_y with 10092 elements.
Creating vector time with 10092 elements.
Creating vector mDepth with 10092 elements.
Creating vector time with 10092 elements.
Creating vector mGpsNorth with 10092 elements.
Creating vector time with 10092 elements.
Creating vector mGpsEast with 10092 elements.
Creating vector time with 10092 elements.
Creating vector mGpsValid with 10092 elements.
Creating vector time with 10092 elements.
Creating vector mPhi with 10092 elements.
Creating vector time with 10092 elements.
Creating vector mTheta with 10092 elements.
Creating vector time with 10092 elements.
Creating vector mPsi with 10092 elements.
Creating vector time with 10092 elements.
Creating vector mOmega_x with 10092 elements.
Creating vector time with 10092 elements.
Creating vector mOmega_y with 10092 elements.
Creating vector time with 10092 elements.
Creating vector mOmega_z with 10092 elements.
Creating vector time with 10092 elements.
Creating vector mPsaRange with 10092 elements.
Creating vector time with 10092 elements.
Creating vector mAltitude with 10092 elements.
Creating vector time with 10092 elements.
Creating vector mWaterSpeed with 10092 elements.
Creating vector time with 10092 elements.
Creating vector nfix with 10092 elements.
Creating vector time with 10092 elements.
Creating vector efix with 10092 elements.
Creating vector time with 10092 elements.
Creating vector filter_north with 10092 elements.
Creating vector time with 10092 elements.
Creating vector filter_east with 10092 elements.
Creating vector time with 10092 elements.
Creating vector filter_depth with 10092 elements.
Creating vector time with 10092 elements.
Creating vector north_current with 10092 elements.
Creating vector time with 10092 elements.
Creating vector east_current with 10092 elements.
Creating vector time with 10092 elements.
Creating vector speed_bias with 10092 elements.
Creating vector time with 10092 elements.
Creating vector heading_bias with 10092 elements.
Creating vector time with 10092 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.05/navigation.nc');
processNav(): median of positive valued depths = 86.1686
processNav(): Finding depths less than 603.1799 and times > 0
processNav(): length(Nav.depth) = 10092
processNav(): length(gindx)     = 10092
 
Processing GPS navigation data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.05/gps.nc')
Creating vector time with 200 elements.
Creating vector UTCTime with 200 elements.
Creating vector time with 200 elements.
Creating vector latitude with 200 elements.
Creating vector time with 200 elements.
Creating vector longitude with 200 elements.
Creating vector time with 200 elements.
Creating vector quality with 200 elements.
Creating vector time with 200 elements.
Creating vector numberOfSatellites with 200 elements.
Creating vector time with 200 elements.
Creating vector hdop with 200 elements.
Creating vector time with 200 elements.
Creating vector antennaHeight with 200 elements.
Creating vector time with 200 elements.
Creating vector geoHeight with 200 elements.
Creating vector time with 200 elements.
Creating vector dgpsDataAge with 200 elements.
Creating vector time with 200 elements.
Creating vector dgpsRSID with 200 elements.
Creating vector time with 200 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.05/gps.nc');
 
Processing depth data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.05/parosci.nc')
Creating vector time with 10196 elements.
Creating vector depth with 10196 elements.
Creating vector time with 10196 elements.
Creating vector temp with 10196 elements.
Creating vector time with 10196 elements.
Creating vector pressure with 10196 elements.
Creating vector time with 10196 elements.
Creating vector temp_period with 10196 elements.
Creating vector time with 10196 elements.
Creating vector pres_period with 10196 elements.
Creating vector time with 10196 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.05/parosci.nc');
in processDepth.m
Before: min(Depth.data) = -0.20681 max(Depth.data) = 200.4407
Found 0 bad (> 300 | < -1.0) depth values in Depth.data.  Replacing with NaNs
After: min(Depth.data) = -0.20681 max(Depth.data) = 200.4407
 
Processing hs2 backscattering and chlorophyll fluorescence data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.05/hydroscatlog.nc')
Creating vector time with 8140 elements.
Creating vector Seconds with 8140 elements.
Creating vector time with 8140 elements.
Creating vector HundrethsOfSeconds with 8140 elements.
Creating vector time with 8140 elements.
Creating vector Snorm1 with 8140 elements.
Creating vector time with 8140 elements.
Creating vector Snorm2 with 8140 elements.
Creating vector time with 8140 elements.
Creating vector Snorm3 with 8140 elements.
Creating vector time with 8140 elements.
Creating vector Gain_Status_1 with 8140 elements.
Creating vector time with 8140 elements.
Creating vector Gain_Status_2 with 8140 elements.
Creating vector time with 8140 elements.
Creating vector Gain_Status_3 with 8140 elements.
Creating vector time with 8140 elements.
Creating vector RawDepthValue with 8140 elements.
Creating vector time with 8140 elements.
Creating vector RawTempValue with 8140 elements.
Creating vector time with 8140 elements.
Creating vector Temperature with 8140 elements.
Creating vector time with 8140 elements.
Creating vector ErrorValue with 8140 elements.
Creating vector time with 8140 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.05/hydroscatlog.nc');
 
Processing CTD #1 data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.05/ctdDriver.nc')
Creating vector time with 8079 elements.
Creating vector conductivity with 8079 elements.
Creating vector time with 8079 elements.
Creating vector temperature with 8079 elements.
Creating vector time with 8079 elements.
Creating vector cond_frequency with 8079 elements.
Creating vector time with 8079 elements.
Creating vector temp_frequency with 8079 elements.
Creating vector time with 8079 elements.
Creating vector spare with 8079 elements.
Creating vector time with 8079 elements.
Creating vector humidity with 8079 elements.
Creating vector time with 8079 elements.
Creating vector flow1 with 8079 elements.
Creating vector time with 8079 elements.
Creating vector OBS with 8079 elements.
Creating vector time with 8079 elements.
Creating vector dissolvedO2 with 8079 elements.
Creating vector time with 8079 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.05/ctdDriver.nc');
Obtaining calibration from http://ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.05/ctdDriver.cfg
Oxygen calibration loaded from CTD config file (current method)
Using constant flow rate offset for oxygen...
 
Processing CTD #2 data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.05/ctdDriver2.nc')
Creating vector time with 8078 elements.
Creating vector conductivity with 8078 elements.
Creating vector time with 8078 elements.
Creating vector temperature with 8078 elements.
Creating vector time with 8078 elements.
Creating vector cond_frequency with 8078 elements.
Creating vector time with 8078 elements.
Creating vector temp_frequency with 8078 elements.
Creating vector time with 8078 elements.
Creating vector flow2 with 8078 elements.
Creating vector time with 8078 elements.
Creating vector spare with 8078 elements.
Creating vector time with 8078 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.05/ctdDriver2.nc');
Obtaining calibration from http://ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.05/ctdDriver2.cfg
 
Processing ISUS data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.05/isuslog.nc')
Creating vector time with 1189 elements.
Creating vector isusNitrate with 1189 elements.
Creating vector time with 1189 elements.
Creating vector isusTemp with 1189 elements.
Creating vector time with 1189 elements.
Creating vector isusQuality with 1189 elements.
Creating vector time with 1189 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.05/isuslog.nc');
Total lag applied to nitrate = 6 seconds
 
Processing Biolume data...
[Warning: "/mbari/matlab/toolbox/matlab/demos" not found in path.] 
[> In rmpath (line 75)
  In processBiolume (line 21)
  In processAUVmission (line 220)
  In AUVprocess_main (line 225)] 
[Warning: "/mbari/matlabR2012a/toolbox/matlab/demos" not found in path.] 
[> In rmpath (line 75)
  In processBiolume (line 22)
  In processAUVmission (line 220)
  In AUVprocess_main (line 225)] 
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.05/biolume.nc')
Creating vector time with 2040 elements.
Creating vector rrr with 2040 elements.
Creating vector time with 2040 elements.
Creating vector cal_striing with 2040 elements.
Creating vector time with 2040 elements.
Creating vector pump with 2040 elements.
Creating vector time with 2040 elements.
Creating vector flow with 2040 elements.
Creating vector time with 2040 elements.
Creating vector humidity with 2040 elements.
Creating vector time with 2040 elements.
Creating vector temperature with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_0 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_1 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_2 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_3 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_4 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_5 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_6 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_7 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_8 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_9 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_10 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_11 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_12 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_13 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_14 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_15 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_16 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_17 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_18 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_19 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_20 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_21 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_22 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_23 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_24 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_25 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_26 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_27 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_28 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_29 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_30 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_31 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_32 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_33 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_34 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_35 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_36 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_37 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_38 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_39 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_40 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_41 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_42 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_43 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_44 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_45 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_46 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_47 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_48 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_49 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_50 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_51 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_52 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_53 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_54 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_55 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_56 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_57 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_58 with 2040 elements.
Creating vector time with 2040 elements.
Creating vector raw_59 with 2040 elements.
Creating vector time with 2040 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.05/biolume.nc');
 
Processing LOPC plankton data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.05/lopc.nc')
Error: Error while reading the URL: http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.05/lopc.nc.dods?.
The OPeNDAP server returned the following message:
Not Found: The data source or server could not be found.
        Often this means that the OPeNDAP server is missing or needs attention;
        Please contact the server administrator.


att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.05/lopc.nc');
Error: Error while reading the URL: http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.05/lopc.nc.das.
The OPeNDAP server returned the following message:
Not Found: The data source or server could not be found.
        Often this means that the OPeNDAP server is missing or needs attention;
        Please contact the server administrator.


*** Setting lopc structure to NaNs. *** 
 
save /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003.230.05.mat BL CTD1 CTD2 hs2 ISUS Nav gps lopc
*************************************************************************
 
 
*************************************************************************
Calling build_auv_survey.m to construct survey file...

SecondaryDissolvedO2 =

     []

Reading: /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003.230.02.mat
Reading: /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003.230.03.mat
Reading: /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003.230.04.mat
Reading: /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003.230.05.mat
Calling matchDVLtoGPS to adjust dvl data in the underwater segments...
setting up UTM transformation using M_Map calls...
Looping over 8 segments.
Current plot held
Printing navigation adjust plot to /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003_230_02_230_05_nav_adjust.png
Saving survey data to /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003_230_02_230_05.mat
Done saving to /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003_230_02_230_05.mat
 
 
*************************************************************************
Calling plot_sections from ../viz to produce section plots ...
Using median boxcar filter of vector...
Using mean boxcar filter of vector...
Number of profiles found = 42 Gridding with nix = 126, iZ = 498
Using mean boxcar filter of vector...
Using mean boxcar filter of vector...
Using max boxcar filter of vector...
Using max boxcar filter of vector...
Using max boxcar filter of vector...
Gridding...
   T
   S
   O
Using median boxcar filter of vector...
Using median boxcar filter of vector...
Using median boxcar filter of vector...
   bbp470
   bbp676
   fl676_uncorr
   N
   BL
   BLflow
   LOPC
Only one good point or fewer - NaNing the gLOPCcount array.
                             - NaNing the gLOPCtransCount array.
                             - NaNing the gLOPCnonTransCount array.
                             - NaNing the gLOPCLCcount array.
 
Masking and filtering with median filter of size 5...
  cvarname = gT
  cvarname = gS
  cvarname = gO
  cvarname = gN
  cvarname = gF
  cvarname = gB470
  cvarname = gB676
  cvarname = gBL
  cvarname = gBLflow
  cvarname = gLOPCcount
No valid data for gLOPCcount
  cvarname = gLOPCtransCount
No valid data for gLOPCtransCount
  cvarname = gLOPCnonTransCount
No valid data for gLOPCnonTransCount
  cvarname = gLOPCLCcount
No valid data for gLOPCLCcount
Encountered 0 NaN values in array of lon that is 91484 elements long
! gmt grdtrack -V ~/tmp/grdTrk.txt -GMonterey25.grd -bos >! ~/tmp/grdTrk.bath
grdtrack: Warning: -b option with type s, S, or D are deprecated; Use <n>f or <n>d, with w to indicate swab
grdtrack: Processing input grid(s)
grdtrack: Output 1 columns via binary records using format f
grdtrack: Sampled 91484 points from grid Monterey25.grd (2876 x 2447)
Getting short wave radiation data from M1 for little plot above the biolume section plot
Creating vector TIME with 119095 elements.
*** Could not find start or end index in Met data read from http://elvis.shore.mbari.org/thredds/dodsC/agg/OS_MBARI-M1_R_M
Looking for start days = 19587.7048 since 1/1/1950
Looking for end   days = 19587.9317
sIndx = 
eIndx = 
Met data goes from 20017.6042 to 24989.0208
No SWR data loaded from URL.
Executing: /bin/rm -f ../results/2003230_GulperTimes.txt && touch ../results/2003230_GulperTimes.txt
Getting mission start epoch seconds from: http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.02/navigation.nc.ascii?time[0:1:0]
Executing: perl parseGulper.pl -syslogFile /mbari/AUVCTD/missionlogs/2003/2003230/2003.230.02/syslog -startEsecs 1061243276.5551 -surveyName Dorado389_2003_230_02_230_05 >> ../results/2003230_GulperTimes.txt
Executing: removeGulpDups.py ../results/2003230_GulperTimes.txt
Getting mission start epoch seconds from: http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.03/navigation.nc.ascii?time[0:1:0]
Executing: perl parseGulper.pl -syslogFile /mbari/AUVCTD/missionlogs/2003/2003230/2003.230.03/syslog -startEsecs 1061243276.5551 -surveyName Dorado389_2003_230_02_230_05 >> ../results/2003230_GulperTimes.txt
Executing: removeGulpDups.py ../results/2003230_GulperTimes.txt
Getting mission start epoch seconds from: http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.04/navigation.nc.ascii?time[0:1:0]
Executing: perl parseGulper.pl -syslogFile /mbari/AUVCTD/missionlogs/2003/2003230/2003.230.04/syslog -startEsecs 1061243276.5551 -surveyName Dorado389_2003_230_02_230_05 >> ../results/2003230_GulperTimes.txt
Executing: removeGulpDups.py ../results/2003230_GulperTimes.txt
Getting mission start epoch seconds from: http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2003/2003230/2003.230.05/navigation.nc.ascii?time[0:1:0]
Executing: perl parseGulper.pl -syslogFile /mbari/AUVCTD/missionlogs/2003/2003230/2003.230.05/syslog -startEsecs 1061243276.5551 -surveyName Dorado389_2003_230_02_230_05 >> ../results/2003230_GulperTimes.txt
Executing: removeGulpDups.py ../results/2003230_GulperTimes.txt
Saving gridded, filtered data to /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003_230_02_230_05_gridded.mat

outvarstr =

    'gF gT gN gS gD gO gB470 gB676 gBL gBLflow gLOPCcount gLOPCtransCount gLOPCnonTransCount gLOPCLCcount idist iZ auvnav distnav ilat ilon profDist profZ dists depths stride sdists sdepths fixLonSubIntrp fixLatSubIntrp GulperLocations bmask bdist bdepth fbdist fbdepth '

2Column contouring gridded variable gD
2Column contouring gridded variable gT
2Column contouring gridded variable gS
2Column contouring gridded variable gN
2Column contouring gridded variable gO
2Column contouring gridded variable gB470
2Column contouring gridded variable gB676
2Column contouring gridded variable gF
2Column contouring gridded variable gBL
Did not add swr plot to the image.
Printing two column section summary to /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003_230_02_230_05_2column.png
Elapsed time to save image: 6 seconds
Biolume contouring gridded variable gD
Biolume contouring gridded variable gT
Biolume contouring gridded variable gS
Biolume contouring gridded variable gN
Biolume contouring gridded variable gO
Biolume contouring gridded variable gB470
Biolume contouring gridded variable gB676
Biolume contouring gridded variable gF
Biolume contouring gridded variable gBL
SWR image not added to the plot.
Printing biolume section summary to /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003_230_02_230_05_biolume.png
Elapsed time to save image: 29 seconds
2Column contouring gridded variable gLOPCcount
2Column contouring gridded variable gLOPCtransCount
2Column contouring gridded variable gLOPCnonTransCount
2Column contouring gridded variable gLOPCLCcount
2Column contouring gridded variable gT
2Column contouring gridded variable gB470
2Column contouring gridded variable gB676
2Column contouring gridded variable gF
2Column contouring gridded variable gBL
Did not add swr plot to the image.
Printing two column section summary to /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003_230_02_230_05_lopc.png
Elapsed time to save image: 5 seconds
 
 
*************************************************************************
Calling plot_survey_stats to produce histogram and profile statistics plots...
Printing section summary to /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003_230_02_230_05_hist_stats.png
Printing section summary to /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003_230_02_230_05_prof_stats.png
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003_230_02_230_05_2column.png...
Copied to /mbari/AUVCTD/surveys/2003/images/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003_230_02_230_05_biolume.png...
Copied to /mbari/AUVCTD/surveys/2003/images/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003_230_02_230_05_lopc.png...
Copied to /mbari/AUVCTD/surveys/2003/images/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003_230_02_230_05_nav_adjust.png...
Copied to /mbari/AUVCTD/surveys/2003/images/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003_230_02_230_05_hist_stats.png...
Copied to /mbari/AUVCTD/surveys/2003/images/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003_230_02_230_05_prof_stats.png...
Copied to /mbari/AUVCTD/surveys/2003/images/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
 
*************************************************************************
Writing KML files ...
KML = write_kml(survey_shrt_filename_base, 'Temperature', jetplus, varlimits(1,:), ctd1.T, time.ctd1, auvnav, depth.ctd1, resultspath);
  adding: u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2003_230_02_230_05_Temperature.kml (deflated 93%)
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2003_230_02_230_05_Temperature.kmz...
Copied to /mbari/AUVCTD/surveys/2003/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
KML = write_kml(survey_shrt_filename_base, 'Salinity', jetplus, varlimits(2,:), ctd1.S, time.ctd1, auvnav, depth.ctd1, resultspath);
  adding: u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2003_230_02_230_05_Salinity.kml (deflated 93%)
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2003_230_02_230_05_Salinity.kmz...
Copied to /mbari/AUVCTD/surveys/2003/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
KML = write_kml(survey_shrt_filename_base, 'Nitrate', jetplus, varlimits(3,:), isus.nitrate, time.isus, auvnav, depth.isus, resultspath);
  adding: u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2003_230_02_230_05_Nitrate.kml (deflated 93%)
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2003_230_02_230_05_Nitrate.kmz...
Copied to /mbari/AUVCTD/surveys/2003/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
KML = write_kml(survey_shrt_filename_base, 'Oxygen', jetplus, varlimits(4,:), ctd1.O2, time.ctd1, auvnav, depth.ctd1, resultspath);
  adding: u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2003_230_02_230_05_Oxygen.kml (deflated 93%)
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2003_230_02_230_05_Oxygen.kmz...
Copied to /mbari/AUVCTD/surveys/2003/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
KML = write_kml(survey_shrt_filename_base, 'Optical Backscatter @470 nm', jetplus, varlimits(5,:), hs2.bbp470, time.hs2, auvnav, depth.hs2, resultspath);
  adding: u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2003_230_02_230_05_Optical_Backscatter_470_nm.kml (deflated 93%)
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2003_230_02_230_05_Optical_Backscatter_470_nm.kmz...
Copied to /mbari/AUVCTD/surveys/2003/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
KML = write_kml(survey_shrt_filename_base, 'Optical Backscatter @676 nm', jetplus, varlimits(6,:), hs2.bbp676, time.hs2, auvnav, depth.hs2, resultspath);
  adding: u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2003_230_02_230_05_Optical_Backscatter_676_nm.kml (deflated 93%)
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2003_230_02_230_05_Optical_Backscatter_676_nm.kmz...
Copied to /mbari/AUVCTD/surveys/2003/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
KML = write_kml(survey_shrt_filename_base, 'Chlorophyll Fluorescence', jetplus, varlimits(7,:), hs2.fl676_uncorr, time.hs2, auvnav, depth.hs2, resultspath);
  adding: u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2003_230_02_230_05_Chlorophyll_Fluorescence.kml (deflated 93%)
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2003_230_02_230_05_Chlorophyll_Fluorescence.kmz...
Copied to /mbari/AUVCTD/surveys/2003/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
KML = write_kml(survey_shrt_filename_base, 'Bioluminescence', jetplus, varlimits(8,:), biolume.biolume, time.biolume, auvnav, depth.biolume, resultspath);
  adding: u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2003_230_02_230_05_Bioluminescence.kml (deflated 94%)
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2003_230_02_230_05_Bioluminescence.kmz...
Copied to /mbari/AUVCTD/surveys/2003/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
KML = write_kml(survey_shrt_filename_base, 'LOPC Total Count', jetplus, varlimits(9,:), lopc.countSum, time.lopc, auvnav, depth.lopc, resultspath);
length(v_esecs(gindx)) =   which is less than 2.  Not processing.
  adding: u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2003_230_02_230_05_LOPC_Total_Count.kml (deflated 94%)
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2003_230_02_230_05_LOPC_Total_Count.kmz...
Copied to /mbari/AUVCTD/surveys/2003/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
Creating Dorado389_2003_230_02_230_05.kml file to hold all the variable .kmz files...
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003_230_02_230_05.kml...
Copied to /mbari/AUVCTD/surveys/2003/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
[Warning: File
'/u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2003_230_02_230_05_LOPC_Total_Count.kml'
not found.] 
[> In create_data_products (line 414)
  In build_auv_survey (line 522)
  In AUVprocess_main (line 255)] 
 
 
*************************************************************************
Writing ODV file ...
Loading survey file /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003_230_02_230_05.mat ...
Iterpolating to isus time values...
Interpolating ctd1 temperature...
Interpolating ctd1 salinity...
1 NaNs found in bbpRed.  Interpolating anyway.
Encountered 22 NaN values in array of lon that is 10962 elements long
! gmt grdtrack -V ~/tmp/grdTrk.txt -GMonterey25.grd -bos >! ~/tmp/grdTrk.bath
grdtrack: Warning: -b option with type s, S, or D are deprecated; Use <n>f or <n>d, with w to indicate swab
grdtrack: Processing input grid(s)
grdtrack: Output 1 columns via binary records using format f
grdtrack: Sampled 10940 points from grid Monterey25.grd (2876 x 2447)
Number of depths returned from grdtrack = 10940 are not equal to number of Lat lon points = 10962
AUV track probably goes outside of the range of the .grd file being used.   Setting bottom depths to 1000 m
Writing to /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003_230_02_230_05.txt
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003_230_02_230_05.txt...
Copied to /mbari/AUVCTD/surveys/2003/odv/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003_230_02_230_05_Gulper.txt...
Tried, but failed to copy to /mbari/AUVCTD/surveys/2003/odv/
cp: cannot stat ‘/u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003_230_02_230_05_Gulper.txt’: No such file or directory
 
 
*************************************************************************
Writing decimated netCDF file ...
Iterpolating to isus time values...
Interpolating ctd1 temperature...
Interpolating ctd1 salinity...
1 NaNs found in bbpRed.  Interpolating anyway.
Saving Global Attributes
Saving Variables and attributes
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003_230_02_230_05_decim.nc...
Copied to /mbari/AUVCTD/surveys/2003/netcdf/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
 
*************************************************************************
Writing netCDF file ...
Saving Global Attributes
Saving Variables and attributes
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003_230_02_230_05.nc...
Copied to /mbari/AUVCTD/surveys/2003/netcdf/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003_230_02_230_05_gridded.mat...
Copied to /mbari/AUVCTD/surveys/2003/mat/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
 
*************************************************************************
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003_230_02_230_05.mat...
Copied to /mbari/AUVCTD/surveys/2003/mat/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
 
*************************************************************************
Composing email to send to mccann@mbari.org ...
!mail -s "Survey Dorado389_2003_230_02_230_05 processed" mccann@mbari.org < mail_Dorado389_2003_230_02_230_05.txt
Removing mission .mat files:
   /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003.230.02.mat
   /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003.230.03.mat
   /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003.230.04.mat
   /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2003.230.05.mat
Processing time: 225 seconds