#!/bin/tcsh
# process - C Shell script to remove processed OASIS data 
#		and reprocess it all
# Copyright (C) 2001 MBARI
# Author: Kent Headley
# MBARI provides this documentation and code "as is", with no warranty,
# express or implied, of its quality or consistency. It is provided without
# support and without obligation on the part of the Monterey Bay Aquarium
# Research Institute to assist in its use, correction, modification, or
# enhancement. This information should not be published or distributed to
# third parties without specific written permission from MBARI.
#

set oasis = /oasis/test
set cfg = $oasis/cfg
set bin = $oasis/bin
set tmp = $oasis/tmp
set TRUE = 1
set FALSE = 0
set doM1 = $FALSE
set doM2 = $FALSE
set doM46044 = $FALSE
set doM46044slave1 = $FALSE
set doOA1 = $FALSE
set doOA2 = $FALSE
set nonomatch

@ i = 1

while ($i <= $#argv )

  if ( ($argv[$i] == "m1") || ($argv[$i] == "M1") ) then
    set doM1 = $TRUE
  endif

  if ( ($argv[$i] == "m2") || ($argv[$i] == "M2") ) then
    set doM2 = $TRUE
  endif

  if ( ($argv[$i] == "oa1") || ($argv[$i] == "OA1") ) then
    set doOA1 = $TRUE
  endif


  if ( ($argv[$i] == "oa2") || ($argv[$i] == "OA2") ) then
    set doOA2 = $TRUE
  endif

  if ( ($argv[$i] == "m46044") || ($argv[$i] == "M46044") ) then
    set doM46044 = $TRUE
  endif

  if ( ($argv[$i] == "m46044slave1") || ($argv[$i] == "M46044SLAVE1") ) then
    set doM46044slave1 = $TRUE
  endif



  @ i++
end 


if ($doM1 == $TRUE) then
set mooring = m1
cd $oasis/$mooring

foreach name (aanderaaO2 adcp emeter error flntu fluor gps hr1 hr2 hr3 hs2 hyperOCR isus lwr swr metsys microcat microcat2 microcat3 o3gf oasis pco2 tstring gpsclock)
	rm -f data/$name $tmp/$name.tmp
	cp $cfg/$mooring/$name.hdr data/$name
	foreach year (2011)
	    foreach file ($name/$year*)
		awk -f $bin/concat.awk -v year=$year $file >> $tmp/$name.tmp
	    end
	    sort $tmp/$name.tmp >> data/$name
	    rm -f $tmp/$name.tmp
	end
end

endif


if ($doM2 == $TRUE) then
set mooring = m2
cd $oasis/$mooring

foreach name (aanderaaO2 adcp emeter error fluor gps hs2 isus metsys microcat oasis o3gf pco2 tstring gpsclock )

	rm -f data/$name $tmp/$name.tmp
	cp $cfg/$mooring/$name.hdr data/$name
	foreach year (2010 2011)
	    foreach file ($name/$year*)
		awk -f $bin/concat.awk -v year=$year $file >> $tmp/$name.tmp
	    end
	    sort $tmp/$name.tmp >> data/$name
	    rm -f $tmp/$name.tmp
	end
end


if ($doOA1 == $TRUE) then
echo "do oa1..."
set mooring = oa1
cd $oasis/$mooring

foreach name (aanderaaO2 adcp error extAnalog1 extAnalog2 microcat pb200 pco2 battmon )
        rm -f data/$name $tmp/$name.tmp
        cp $headers/$mooring/$name.hdr data/$name
        foreach year ( 2013 )
            foreach file ($name/$year*)
                awk -f $bin/concat.awk -v year=$year $file >> $tmp/$name.tmp
            end
            sort $tmp/$name.tmp | uniq >> data/$name
            rm -f $tmp/$name.tmp
        end
end
echo "done oa2..."

endif

if ($doOA2 == $TRUE) then
echo "do oa2..."
set mooring = oa2
cd $oasis/$mooring

foreach name (aanderaaO2 adcp error extAnalog1 extAnalog2 microcat pb200 pco2 battmon )
        rm -f data/$name $tmp/$name.tmp
        cp $headers/$mooring/$name.hdr data/$name
        foreach year ( 2013 )
            foreach file ($name/$year*)
                awk -f $bin/concat.awk -v year=$year $file >> $tmp/$name.tmp
            end
            sort $tmp/$name.tmp | uniq >> data/$name
            rm -f $tmp/$name.tmp
        end
end
echo "done oa2..."

endif

if ($doM46044 == $TRUE) then
echo "do m46044..."
set mooring = m46044
cd $oasis/$mooring

foreach name (aanderaaO2 emeter error fluor gps hs2 isus oasis o3gf pco2 gpsclock )
        rm -f data/$name $tmp/$name.tmp
        cp $headers/$mooring/$name.hdr data/$name
        foreach year ( 2013 )
            foreach file ($name/$year*)
                awk -f $bin/concat.awk -v year=$year $file >> $tmp/$name.tmp
            end
            sort $tmp/$name.tmp | uniq >> data/$name
            rm -f $tmp/$name.tmp
        end
end

endif

if ($doM46044slave1 == $TRUE) then
echo "do m46044slave1..."
set mooring = m46044-slave1
cd $oasis/$mooring

foreach name (aanderaaO2 emeter error fluor gps hs2 isus oasis o3gf pco2 gpsclock )
        rm -f data/$name $tmp/$name.tmp
        cp $headers/$mooring/$name.hdr data/$name
        foreach year ( 2013 )
            foreach file ($name/$year*)
                awk -f $bin/concat.awk -v year=$year $file >> $tmp/$name.tmp
            end
            sort $tmp/$name.tmp | uniq >> data/$name
            rm -f $tmp/$name.tmp
        end
end

endif