#! /bin/csh
# process - C Shell script to remove processed OASIS data 
#		and reprocess it all
#

set oasis = /oasis
set cfg = $oasis/cfg
set bin = $oasis/bin
set tmp = /oasis/tmp
set nonomatch

set mooring = m1
cd $oasis/$mooring

foreach name (adcp ctd eco-bs eco-fl fluor gf gps hs2 metsys oasis pco2 shutter0 shutter1 specprr specprr.volts tstring)
	rm -f data/$name $tmp/$name.tmp
	cp $cfg/$mooring/$name.hdr data/$name
	foreach year (1999 2000)
	    foreach file ($name/$year*)
		awk -f $bin/concat.awk -v year=$year $file >> $tmp/$name.tmp
	    end
	    sort $tmp/$name.tmp >> data/$name
	    rm -f $tmp/$name.tmp
	end
end

foreach name (nitrate)
	rm -f data/$name
	cp $cfg/$mooring/$name.hdr data/$name
	foreach file ($name/1999* $name/2000*)
		grep -v \# $file >> data/$name
	end
end

set mooring = m2
cd $oasis/$mooring

foreach name (adcp ctd gf gps metsys oasis pco2 shutter0 specprr tstring)
	rm -f data/$name $tmp/$name.tmp
	cp $cfg/$mooring/$name.hdr data/$name
	foreach year (1999 2000)
	    foreach file ($name/$year*)
		awk -f $bin/concat.awk year=$year $file >> $tmp/$name.tmp
	    end
	    sort $tmp/$name.tmp >> data/$name
	    rm -f $tmp/$name.tmp
	end
end

set mooring = m4
cd $oasis/$mooring

foreach name (adcp ctd gf gps metsys oasis tstring)
	rm -f data/$name $tmp/$name.tmp
	cp $cfg/$mooring/$name.hdr data/$name
	foreach year (1999 2000)
	    foreach file ($name/$year*)
		awk -f $bin/concat.awk year=$year $file >> $tmp/$name.tmp
	    end
	    sort $tmp/$name.tmp >> data/$name
	    rm -f $tmp/$name.tmp
	end
end

foreach name (abeta cbeta hs2 hr1 hr2 hr3 hr4)
	rm -f data/$name
	cp $cfg/$mooring/$name.hdr data/$name
	foreach file ($name/1999* 2000*)
		grep -v \# $file >> data/$name
	end
end

foreach mooring (m1 m2 m3 m4)
	cd $oasis/$mooring/data
	awk -f $bin/ctdmean.awk ctd > ctd.mean
end

$bin/process.m2t